Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26210 346 / 8e-114 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT1G13110 338 / 2e-110 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT3G26300 332 / 2e-108 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26280 330 / 3e-107 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1) AT3G26330 329 / 3e-107 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26310 328 / 9e-107 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT5G25130 327 / 2e-106 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1) AT5G25180 326 / 6e-106 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT5G25120 325 / 2e-105 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT5G25140 324 / 3e-105 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029035 [exp] 820 / 0 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10016601 [exp] 496 / 3e-172 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10009903 [exp] 444 / 1e-151 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10033633 [exp] 436 / 1e-148 AT3G26330 362 / 4e-120 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10017676 [exp] 433 / 2e-147 AT3G26300 367 / 3e-122 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10030924 [exp] 423 / 2e-143 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10024331 [exp] 423 / 2e-143 AT5G25180 378 / 4e-126 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) Lus10012767 [exp] 420 / 2e-142 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10033634 [exp] 414 / 1e-139 AT5G25180 363 / 1e-120 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G365100 [exp] 467 / 7e-161 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 455 / 3e-156 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 452 / 5e-155 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.007G074900 [exp] 440 / 3e-150 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 436 / 1e-148 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 435 / 2e-148 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 427 / 3e-145 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 424 / 3e-144 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 424 / 6e-144 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365300 [exp] 414 / 2e-141 AT3G26300 291 / 7e-94 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10034230 pacid=23175887 polypeptide=Lus10034230 locus=Lus10034230.g ID=Lus10034230.BGIv1.0 annot-version=v1.0 ATGGATCCCATAACACTCTTGATCTCAATCCTAACTCTCTCCATCTTCGCAATCCTAATCAAACTCCAAACCAAACCGAAACCCAACTCCCCAAACCAAC CTCCGCCGCCGCCGGGGCCATGGAGGTTACCCATCGTAGGACACATCCACCACTTAGCCGCCGGCGACGGGAAAACTCTGCCCCACCGCCGCCTCCGCGA CCTATCCCAAACCCACGGCCCCGTAATGCTCCTCCAGCTCGGAGAAATCAGCCACGTCGTCATCTCCTCGCCGGAAGCGGCGAGGGAGATCTTCAAAACC CACGACGCCGTCTTTTCGCAGCGCCCCTTCAACCTCGCCGCCAAAATCATCACCTACGACCGCTCCGACCTCGCCCACGCCGCCTACGGCGACTTCTGGC GCCAGATTCGCAAGCTATGCACCATGGAGCTCCTTAGTCCCAAACGGGTCGGGTCGTTCCGCCCCATCCGCGAGGAGGAAGGATTGAACTTCGTCGGCCG GATTGCCGCCGCCTCCGCCGCGGCGCCTTCGTCGCCGGTGAACTTGTCGAGGATGGTTTTTGTGCTGACTTACGGTGTGACGTCGAGGATTGCGTTCGGG CAAAGGTGTAAAGTTGACGACGATGACGATCAGTATGTTGCAGTGGTGGAGGAGATTATGGCGGCGGCAGTTGGGTTCGGGGTGGCAGATTTGTTCCCGT CGGTGAAGTGGTTGCAAAAATTGAGTGGGATGCAGGGGAAATTGAGGAGGCTTCATGGAGTTCAGGATAAGTTGCTTGAGAGCATAATTGCAGAGCATCG AGCTAGAAGAGAAACAGGGGAAGGAAAAAACAGAGGAATTGGAGAAGAAGAAGCAGAGGATTTGGTGGATGCTCTATTGAATCTTCAGAGAGATAATGGA GATGATCATCAGCTTGGGTTTAGCTTGACTAACGACAACATCAAGGCTGTTATCGGGGATGTGTTTATCGCTGGTAGCGAGACTTCGTCAACGACAGTAG AGTGGGCGATTTCGGAGCTTATAAAGAACCCTGACGTGATGCGCAAGGCACAGACAGAAGTGAGGGGAGTTTTCGGCGGGGAAGGCCGAGTCTACGAAGC GGGGCTCCAGGAGCTGAGTTATTTGAAGCTTGTAATCAAGGAGACGCTACGGTTGCACACTCCGGCGCCTCTGCTCGTACCGAGAGAGAGCAGGGAGGAG TGCGAGGTGGGCGGGTATCTGATACCCGCCAAGGCGACTGTGATGGTAAACGCGTGGGCGATCGCAAGGGATCCCAAAACGTGGGACGAGCCCGAAACGT TTCGCCCCGAGAGGTTTCTGGATGGCTCGATCGACTACAAAGGGACCAACTTTGAGTACCTCCCGTTCGGTGCTGGAAGGAGGATGTGTCCTGGAATAGG GTTTGGGATAGCAAATACCGAGCTTCCGCTTGCGAATTTGCTCTTCTACTTCGATTGGAAGCTCCCCGGTGATATGAAGATGGGGAGCTTGGATATGGAG GAATCTTTCGGTGTCACTGTTAAGAGGAAACATGACCTTCAAGTTGTTCCTCAGGTCCGGTACCCACCACCGGCTATCTGA
AA sequence Show only first row Show all	>Lus10034230 pacid=23175887 polypeptide=Lus10034230 locus=Lus10034230.g ID=Lus10034230.BGIv1.0 annot-version=v1.0 MDPITLLISILTLSIFAILIKLQTKPKPNSPNQPPPPPGPWRLPIVGHIHHLAAGDGKTLPHRRLRDLSQTHGPVMLLQLGEISHVVISSPEAAREIFKT HDAVFSQRPFNLAAKIITYDRSDLAHAAYGDFWRQIRKLCTMELLSPKRVGSFRPIREEEGLNFVGRIAAASAAAPSSPVNLSRMVFVLTYGVTSRIAFG QRCKVDDDDDQYVAVVEEIMAAAVGFGVADLFPSVKWLQKLSGMQGKLRRLHGVQDKLLESIIAEHRARRETGEGKNRGIGEEEAEDLVDALLNLQRDNG DDHQLGFSLTNDNIKAVIGDVFIAGSETSSTTVEWAISELIKNPDVMRKAQTEVRGVFGGEGRVYEAGLQELSYLKLVIKETLRLHTPAPLLVPRESREE CEVGGYLIPAKATVMVNAWAIARDPKTWDEPETFRPERFLDGSIDYKGTNFEYLPFGAGRRMCPGIGFGIANTELPLANLLFYFDWKLPGDMKMGSLDME ESFGVTVKRKHDLQVVPQVRYPPPAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10034230 [exp]	0	1
AT3G09520		ATEXO70H4	exocyst subunit exo70 family p...		Lus10024438 [exp]	1.4	0.9955
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10012879 [exp]	1.7	0.9958
AT5G39160			RmlC-like cupins superfamily p...		Lus10032016 [exp]	2.4	0.9942
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10031100 [exp]	3.9	0.9914
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10029035 [exp]	4.0	0.9914
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10017624 [exp]	4.9	0.9939
AT2G38870			Serine protease inhibitor, pot...		Lus10018786 [exp]	5.2	0.9922
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10003148 [exp]	6.0	0.9934
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10021743 [exp]	6.6	0.9920
AT3G07310			Protein of unknown function (D...		Lus10002343 [exp]	7.4	0.9937

Compare expression of checked genes

Lus10034230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.