Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65440 424 / 1e-132 GTB1 global transcription factor group B1 (.1.2.3) AT1G63210 377 / 7e-117 Transcription elongation factor Spt6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029079 [exp] 503 / 5e-162 AT1G65440 1451 / 0.0 global transcription factor group B1 (.1.2.3) Lus10011344 [exp] 487 / 8e-155 AT1G65440 1946 / 0.0 global transcription factor group B1 (.1.2.3) Lus10003130 [exp] 486 / 2e-154 AT1G65440 1938 / 0.0 global transcription factor group B1 (.1.2.3) Lus10029034 [exp] 372 / 2e-124 AT1G65440 404 / 2e-130 global transcription factor group B1 (.1.2.3) Lus10029085 [exp] 350 / 3e-111 AT1G65440 761 / 0.0 global transcription factor group B1 (.1.2.3) Lus10013071 [exp] 177 / 6e-47 AT1G65440 275 / 7e-79 global transcription factor group B1 (.1.2.3) Lus10029078 [exp] 104 / 3e-26 AT1G65440 150 / 5e-43 global transcription factor group B1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G031900 [exp] 456 / 3e-143 AT1G65440 1982 / 0.0 global transcription factor group B1 (.1.2.3) Potri.016G029200 [exp] 456 / 4e-143 AT1G65440 1961 / 0.0 global transcription factor group B1 (.1.2.3) Potri.001G034300 [exp] 317 / 2e-93 AT1G65440 1251 / 0.0 global transcription factor group B1 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034231 pacid=23175850 polypeptide=Lus10034231 locus=Lus10034231.g ID=Lus10034231.BGIv1.0 annot-version=v1.0 ATGGAATTTGATGGAATTCACGGTAAAGAGGAGGAGGATCAAGATGTTGAAGTCGGGGATGAGGATGAGATGGCAGATTTCATCGAAGAGATCGATGAGG AGGTGAAGGGGAAGAAATCAAGGCAAATATATGGTGCTTCTTCTCGTGCTCAGCAGGAAGGTCGTGAAATGTTTGGGGATGTCGAAGAGCTCTTATGGCA GCGAATATGGACAAGCTTGTGGAATAAGATATCGGTCGGTCCATTTCGAAGGAAAGAAAATGACCATTCTGCCCCGAGGGTCATGGCTTGCTGTTGGGGG CCTGGAAATCCTGCAACGACCTTTGTTATGTTAGATTCGGCCGGGGCTGTGCTAGACGTGCTTTATACTGGCTCACTTACATCACGTTCTCAAAATGTTG ATGAGCAGCAAAGGAAGACACATGATCAGCAGCAAGTTCTGAAGTTTCTGATGGATCATCAACCACATGTGGTCGTTCTAGGCTCTGTCAATTCGTCTTG TAGGAAACTGAAGGAAGAAATCCATGAGATAATATGTAAGATGGTGGAAGAAAATCCCAGAGACATGGGACATGATATGGACGAATTAAGCATTGTGTAT GGAGATGAGTCTCTTCCACGCATTTTCGAGAATTCCCGGATTTCTTCTGATCAACTACCTAAACATTCAGGACTCATCAGAAGGGCGGTCGCTCTCGGAC GCTACCTTCAAAACCCACTGGCAATGGCTGCGACTCTGTGCGGACCTGGAAGAGAGATCTTATCTTGGAAGCTCAATCGTTTAGACGAATTCCTGACTCC CGACGAAAAATATGCAATGGTTGAACAGGTTATGGTGGACGTCACAAACCAGGTCGGGCTCGACGTTAATCTGGCTATAGGCCATGAATGGCTATTTGCT CCACTGCAGTTTATCTCCGGGCTTGGACCGAGTAAAGCAGCTTCTCTGCAAAGATCTCTCGTAAGCGCAGGAGCAATTCACACGAGGAAAGACTTTGTTA CAGACCACGACCTCGGCAGAAAGGTAGATTTGTGGATCGGCGCAGACCGTATGAAGAACCTAGCAGAGGAAGAAGAATTGTACATGATTTTCGGCGAAAC TAAAGATTCAATTGGGGAAGGTAGAATGGTCCAAGCTACTGTCCGCAAGGTCGTGTCTGGTGTGAAAGCGATATGTTGTCTCGAATCTGGATTGACAGGG ATACTTATGAGGGAAGACTACGGTGATTACTCGCAAGATACTCTCTGTGAAGGCGACATACTCACCTGCTGGATAAACTCTGTTGAAAAAATGAAGGGAT ACCAGGTCGAGCTAACTTGTAGCGAGACTGGGATGAGGAATAACCGAAGCCAGCCAGTCCGAGACCCTTATTACCATGAAGATACAATTAGCTTGCAGAG AAAGGCTTGTGAAGAGAAGGAGCTTGCGAAAAAGCATTTCAAACCAAGGATGATCTCGCATCCCCAATTCCAGAATATTACATCGGATGAAGCTATGCAG TTTTTGGCCGATAAGGAGCCCGGAGCAAGCATTTTTCGTCCAAGTTCTCGCGGCCCCTCGCATCTAACTCTTACTCTGAAATTCTACAACGGAGTTTATA CCCACACAGACATAGTTGAGGGGGGTAAAGACCGCAAGGACATCAGCAGTCTTCTACGCAACGGGAAGACATTGGAAATCGGGGAGGACACTTTCGAGCA TTTGGACGAGGGCACGAAGGCAGAAGTGGATGAGCTCCTGAAGATCGAGAAAGCAGAGAATCCTAAGACGATACGGTATTGCTTAGGCATATCTCATGAG CTTCCAGGAACTTTCAATCTCACCTATATAACGGGTACAAGTCCACATCACGGTTGCGTAGTCCTGACCCCAAAAGGATTCAAGTTCTGCAGGGAGATGT TTCCGGACATCAATAAGCTTGTCAAATACTTGCAGGAGCTCATGTATAAATTGATGGCTGCTATGGTGCTGATGAGGAGCCTGTCTCCCGGAGGAAATTT TGGAGGATCACCTGCTTTATGTGTTTAG
AA sequence Show only first row Show all	>Lus10034231 pacid=23175850 polypeptide=Lus10034231 locus=Lus10034231.g ID=Lus10034231.BGIv1.0 annot-version=v1.0 MEFDGIHGKEEEDQDVEVGDEDEMADFIEEIDEEVKGKKSRQIYGASSRAQQEGREMFGDVEELLWQRIWTSLWNKISVGPFRRKENDHSAPRVMACCWG PGNPATTFVMLDSAGAVLDVLYTGSLTSRSQNVDEQQRKTHDQQQVLKFLMDHQPHVVVLGSVNSSCRKLKEEIHEIICKMVEENPRDMGHDMDELSIVY GDESLPRIFENSRISSDQLPKHSGLIRRAVALGRYLQNPLAMAATLCGPGREILSWKLNRLDEFLTPDEKYAMVEQVMVDVTNQVGLDVNLAIGHEWLFA PLQFISGLGPSKAASLQRSLVSAGAIHTRKDFVTDHDLGRKVDLWIGADRMKNLAEEEELYMIFGETKDSIGEGRMVQATVRKVVSGVKAICCLESGLTG ILMREDYGDYSQDTLCEGDILTCWINSVEKMKGYQVELTCSETGMRNNRSQPVRDPYYHEDTISLQRKACEEKELAKKHFKPRMISHPQFQNITSDEAMQ FLADKEPGASIFRPSSRGPSHLTLTLKFYNGVYTHTDIVEGGKDRKDISSLLRNGKTLEIGEDTFEHLDEGTKAEVDELLKIEKAENPKTIRYCLGISHE LPGTFNLTYITGTSPHHGCVVLTPKGFKFCREMFPDINKLVKYLQELMYKLMAAMVLMRSLSPGGNFGGSPALCV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65440		GTB1	global transcription factor gr...		Lus10034231 [exp]	0	1
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10036880 [exp]	1.4	0.8191
AT2G25010			Aminotransferase-like, plant m...		Lus10003764 [exp]	3.5	0.7679
AT5G40250			RING/U-box superfamily protein...		Lus10008797 [exp]	4.0	0.7679
					Lus10021381 [exp]	4.0	0.8008
AT3G22490			Seed maturation protein (.1)		Lus10015948 [exp]	5.9	0.7668
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10042872 [exp]	7.1	0.6433
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10004365 [exp]	10.8	0.6748
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10020511 [exp]	12.2	0.7418
AT4G34135		UGT73B2	UDP-glucosyltransferase 73B2 (...		Lus10010240 [exp]	12.8	0.6788
AT5G03100			F-box/RNI-like superfamily pro...		Lus10029952 [exp]	13.7	0.7404

Compare expression of checked genes

Lus10034231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.