Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79460 554 / 0 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61120 221 / 5e-60 TPS4, GES, TPS04 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) AT4G02780 191 / 3e-50 ATCPS1, ABC33, GA1 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G16740 132 / 5e-32 ATTPS03 terpene synthase 03 (.1.2) AT4G16730 125 / 7e-30 AtTPS02 terpene synthase 02 (.1) AT1G33750 119 / 1e-27 AtTPS22 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 114 / 4e-26 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT2G24210 110 / 9e-25 AtTPS10 terpene synthase 10 (.1) AT1G61680 107 / 6e-24 ATTPS14 terpene synthase 14 (.1.2) AT3G25810 105 / 2e-23 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034229 [exp] 991 / 0 AT1G79460 583 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10029033 [exp] 772 / 0 AT1G79460 662 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10012880 [exp] 764 / 0 AT1G79460 677 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10014673 [exp] 751 / 0 AT1G79460 650 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006923 [exp] 706 / 0 AT1G79460 538 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004443 [exp] 706 / 0 AT1G79460 564 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004906 [exp] 642 / 0 AT1G79460 531 / 1e-178 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10024120 [exp] 426 / 3e-134 AT1G79460 522 / 3e-173 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10005399 [exp] 417 / 1e-132 AT1G79460 515 / 1e-172 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G082400 [exp] 619 / 0 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082700 [exp] 619 / 0 AT1G79460 818 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.004G037900 [exp] 270 / 2e-77 AT1G61120 782 / 0.0 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) Potri.002G052100 [exp] 192 / 1e-50 AT4G02780 863 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.005G210300 [exp] 188 / 3e-49 AT4G02780 829 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.001G308200 [exp] 136 / 4e-33 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.001G308300 [exp] 134 / 2e-32 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 133 / 2e-32 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.011G032300 [exp] 130 / 6e-32 AT1G61680 350 / 1e-115 terpene synthase 14 (.1.2) Potri.019G023006 [exp] 130 / 2e-31 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10034232 pacid=23175942 polypeptide=Lus10034232 locus=Lus10034232.g ID=Lus10034232.BGIv1.0 annot-version=v1.0 ATGAAGTTCCAGAGGAACAACGGCTCTCTCTTCAACTCTCCTTCCGCCACCGCTGCTGCTCTCATTCACCTTCGTGACGACGCCAATTCACTTCGCTACC TCCGATCAGTCGTCGACGTCACCTCTGGGAAGAATTTTTGTGTGCCAGCGATTTATCCCAACGGAACTCATGCTCGGCTCTGCCTGATTGACGCCATTGA TAATCTCGGAATCAGTCGCTATTTTCGGGAGGAGATTAAGGTGGCATTAGACGACATTTACAGAATTTGGGAGGAGGGAGATGAAGAGATATTCTTTCAC TCCACAGCTTGCGCCATGGCTTTTCGAATACTACGACTGAATGGATATCCTGTCTCTCCAGGCAAATTCCTTGCTTTTCATTTACATGGACAGACTCACT GCTTTGTGCATTTTGTTTACAGAACTCTTGTTTTCTCATCGTTTGCAGAAGTCTTTGGTCGATTCTCGGAAGATCGATATTGGAACGAGACGATGGGAGG GTATTTGAAAGATGAGAGAGCGGTGTTGGAATTACACAAAGCCTCGGAGGTCATGTACCCGGAAGAATCAATTCTGGAACACCAACACTGCTGGACAACT CGATCTTTGACGAAGTCAGACCAAGATTCATGGCATAGTAAACCAATTTCCACACAGGCCTTTACGTACATCAACGATGAAACCAGAGACAGAGCCAGGA AACTATTCGTTGGTACCGAACTTTCAGTGTCTGCATACGACACCGCATGGGTAGCTATGGTTCCATCACATGGATCTGCAGGATCTGCAATGATGCCTTG TTTCCCAGAGTGTGTGAACTGGATACTTGAAAATCAACAGAAGAATGGTTCTTGGGGTCTAAGCTTCAATGATCAAGATCAGTCAAGTAATTTGCTAGTA AAAGACACTCTATCGTCCACTTTGGCTTGTGTTCTTGCTCTCAAACGTTGGGGCATCGGCCACCAACATATCCACAACGGCCTTAGATTTATGGAGAGGA ACTCGGGCTCTCTCATGGATCCAGCCCAACAAACCCCAATCGGGTTCGACGTGATATTTCCCGCCATGATTCAAACCTCTGTCAAGGATTTCAATTTGAA TCTCCCGCTAAAATCAGCCAACATCGACGCCATGATCCGCAACAGAGAATCCATACTCAGTAACTCCTCCAACAATTCGGAAGGAAGAAATGCCTACTTG GCCTACATCTCTGAAGGAATTGGAGATCTACAAGATTGGGAAACCGCCATTAAATTCCAGAGGAACAACGGCTCCATCTTCAACTCTCCCTCCGCCACTG CCGCCGCCTTCATCCACCTTCAGGACCCCGATTCCCTCCGCTACCTCCGATCAGTCGTCGACGTGGATTCCGCAGTTCCAGCGATTTACCCCCACGGCCT TCAAGCTCGTCTCTGCCGAATCGAAGCTGCCGACAGGTTAGGAATCAATCGCCATTTCCGTGACGAAATTAGGGCGTTGTTGGATGAGGTCTACAGATGC TGGCAGCAGGGAGATGAAGAGATCTTCCTCGACCCCACAGCTTGCCCCATGGCATTTCGAATCTTGCGACTCAATCAATACCCTGTCTCCTCAGATGTGT TCAGTAGATTCACTGAAGATCGGTTCTGGAACGATACCTTAGAAGGGTATTTGAAGGATAAGAGAGCTGTGTTGGAATTATACAAAGCTTCCCAAGTGAT TTATCAGAAAGATTCGATTCTGGAGCAGCAGCAGTTGTGGACGCGTCAGTTCCTCATCAGATTACTTGATGAACAATCGTCTAACAATGACAAATCTGTT ATCATAGAGCTAGCTGTGTTCACTAGCTGCAAGAATTCGTGGCGCAACGATATGGCGAAACTTGCAGTGGGAGACTTCAACTCTCTTCAGTCCACATACC GCACCGAACTTGAACACCTTATTTCGTGGCTTGAAGAGAAAGGGCTTGACAAGATGCTGGCTGCCAAGGCAAGACTTGGCTACGGTTACCTCAGCGCTGC TGCGATTTTCCCCGATCCAGATCACTCAGATGCCCGCATTTCATTCTCGAAACACGTTCTTCTCATCACTCTCGTCGATGATGCGTTCGACATGTTTGGA ACTCAGGAGGAGCTCTTAAACATCGTAGATCTCTTGGAGAAGTGGGATGTTGATGAACCAAAGGCAGAGTTCAGTTCAGAGCTAGTGAAAACACTGTACT GGGCAATCCACAGCGCAATTTGTGAGAACGTGGAGAGAGCATTCCCGCTTCAAGGACGTAGTATTATGGATCACGCCGCGGAAGCTTGGGCGAATTTGCT TAAGGCAATGCTGAAAGAAGCAGAGTGGTCTAGAACAAACACATCCCCGTCACTGGAAGAATACGCCACAAATGGAACCATTTCACTTGGTCTAGGAGTA TGCCTGGTCCTTGCTCTCTACCTGGCCGGGCACGAGCTTTCGGACCGACTCGTAAAGGGCGCAGAGTTCCAGAAGCTGTTCTTGTTAACAAGCTATATCG GGCGGTTACTGAACGATTCGAGAGGCTTCGAGAGGGAAGAACTGGACGGAAAACCGAACGCGGTGCTGCTGCGAATTGCGAGGAAGAGTAGCAAAGAACG AAATTGTGCCGAAAAGGAAGCCATCGAAGAGGTTGGCAGGATCATAGAGAAGCTGACGAGAGAAGTTCTGGAGTTAGCTATGGATGACGGTGATGGCGGC GAAGTTCCAAGTGAGATCAGGGCAAAGTTCTGGTCCAATGTCAGGGTTGTCCACATGTTCTACATGAAGGAGGACTTGTTCTTTGGTAATACTAATGCGG TTCAAGTTGTAGAGTCTCTAATCTGGGAACCTCTCTCGTTAAGTGCTAGCTAA
AA sequence Show only first row Show all	>Lus10034232 pacid=23175942 polypeptide=Lus10034232 locus=Lus10034232.g ID=Lus10034232.BGIv1.0 annot-version=v1.0 MKFQRNNGSLFNSPSATAAALIHLRDDANSLRYLRSVVDVTSGKNFCVPAIYPNGTHARLCLIDAIDNLGISRYFREEIKVALDDIYRIWEEGDEEIFFH STACAMAFRILRLNGYPVSPGKFLAFHLHGQTHCFVHFVYRTLVFSSFAEVFGRFSEDRYWNETMGGYLKDERAVLELHKASEVMYPEESILEHQHCWTT RSLTKSDQDSWHSKPISTQAFTYINDETRDRARKLFVGTELSVSAYDTAWVAMVPSHGSAGSAMMPCFPECVNWILENQQKNGSWGLSFNDQDQSSNLLV KDTLSSTLACVLALKRWGIGHQHIHNGLRFMERNSGSLMDPAQQTPIGFDVIFPAMIQTSVKDFNLNLPLKSANIDAMIRNRESILSNSSNNSEGRNAYL AYISEGIGDLQDWETAIKFQRNNGSIFNSPSATAAAFIHLQDPDSLRYLRSVVDVDSAVPAIYPHGLQARLCRIEAADRLGINRHFRDEIRALLDEVYRC WQQGDEEIFLDPTACPMAFRILRLNQYPVSSDVFSRFTEDRFWNDTLEGYLKDKRAVLELYKASQVIYQKDSILEQQQLWTRQFLIRLLDEQSSNNDKSV IIELAVFTSCKNSWRNDMAKLAVGDFNSLQSTYRTELEHLISWLEEKGLDKMLAAKARLGYGYLSAAAIFPDPDHSDARISFSKHVLLITLVDDAFDMFG TQEELLNIVDLLEKWDVDEPKAEFSSELVKTLYWAIHSAICENVERAFPLQGRSIMDHAAEAWANLLKAMLKEAEWSRTNTSPSLEEYATNGTISLGLGV CLVLALYLAGHELSDRLVKGAEFQKLFLLTSYIGRLLNDSRGFEREELDGKPNAVLLRIARKSSKERNCAEKEAIEEVGRIIEKLTREVLELAMDDGDGG EVPSEIRAKFWSNVRVVHMFYMKEDLFFGNTNAVQVVESLIWEPLSLSAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10034232 [exp]	0	1
AT1G26380			FAD-binding Berberine family p...		Lus10021289 [exp]	2.0	0.8350
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10041993 [exp]	2.4	0.7820
					Lus10005828 [exp]	3.5	0.7545
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Lus10027013 [exp]	8.8	0.5845
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10031061 [exp]	9.0	0.7631
AT3G14250			RING/U-box superfamily protein...		Lus10022064 [exp]	9.7	0.7316
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	12.5	0.7295
AT5G57520	C2H2ZnF	ATZFP2, ZFP2	zinc finger protein 2 (.1)		Lus10006960 [exp]	13.3	0.6690
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	13.7	0.7269
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	14.7	0.7269

Compare expression of checked genes

Lus10034232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.