Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79150 764 / 0 binding (.1) AT2G17250 47 / 8e-05 EMB2762 EMBRYO DEFECTIVE 2762, CCAAT-binding factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029032 [exp] 1441 / 0 AT1G79150 836 / 0.0 binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G096900 [exp] 923 / 0 AT1G79150 850 / 0.0 binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07540 [flax] [poplar] NOC3p Nucleolar complex-associated protein PF03914 [flax] [poplar] CBF CBF/Mak21 family
Representative CDS sequence Show only first row Show all	>Lus10034234 pacid=23176123 polypeptide=Lus10034234 locus=Lus10034234.g ID=Lus10034234.BGIv1.0 annot-version=v1.0 ATGGCAGTATTAGTTTATTGTCTGGCAACGAGCGATGTGGCTTCATCAAACATTATCATTCGTGATGACCTAAAAAATGTTATCAAGGAAGGGTCACCCG CCAGCCGTTTCCTGCTCGCCTTCAGCCGGCGTTCCTCCTCAAGCTGTCAGAACTTCGTTTTCCGGTCGTCGCCGTTTGTGGGCTTGCCTCCATCTGGTGT ATCAGTTCAATTTGTTCCTACATCCGTCGTTTTCCTGTCGCCGCTGTTTATCCAGCTGGTACGAATGGGGAGGAAGAAGCAGCAGAAGAAGACAGTGTTG CCTCCAGCTCTCCCGCCGGAGGTCCCAGAGGATGAAATCGAAGTCTCTGACGAGGACTTGGAGTTTGTCGCCAAGAATCAAGATTTTGCCGGCTTTCTCA CTAAATTGGACACCCGGACCATCGACAAGCATGTGAACCGAGTGACTGATGCGAAAGGCAAAAAAGTGGAAGATGATGCTCTTGAGGCTTTATACGAGGA GCGGTTGCGCAAGAGATCAATAGAGGATGAGAAGAAAGAGAAGAAGGTCGAAGTTGATCCAGTCCATGAACTTCCAGTGAAGACTTTGGACGGACAGCTC TATTACGTGAAGAAAAGTGAAGATAAAAGGACTGAAGATGGAGAAGATGGGGATGATCAGAAGGATATTGGTATGATAAGGTTAACCAAGGCTGAAAAGA GGGCTAAGTTCAAAAAGGCCAGGAAAGAGGCCAAGAAACTAGCTGATTTCTCCACTGAAGCTGAAGAGACAGTAGATGAAGAAGCTCCACCACAGGCTGC TGCACTGGCGGAAATTAAGAAGGATCTAACGGCAGAAGAAGTATTTGAAAGCAAGAAGCAGAAACTTGCGGAGCTTGGACTTGCATTGCAAGCTGATCCC GAGGAAAACATAAAGTTGCTGAAAGAACTACTTCAGTTATGCCGGGACCATGATCCAAACATAGTGAAACTGAGCGTGTTGTCCTTGCTTGCTGTTTTCA AAAGCATAATCCCTGGATATCGAATAAGGCTTCCAACGGATAAGGAGCTAGAGATGAAAGTTTCCAAGGAAGTGAAGAAGACTCGATTTTACGAATCAAC ACTTTTGTCCACATACAAGGCATATCTGCAGCGTCTTGTGGTACTCCAGAAAGACTCCAAATTTCAGCATGTTGCTGTGCGTTGTTTATGCACTATGCTG GATGCAGCTCCGCACTTCAACTTCTGGGAAGGCTTGTTAACTGCTGTGGTAGCAAACATAGGTTCCCCAGATGATGTTATAAGAAGACTTAGCTGTGAGA CTGTAAAGTCACTTTTTTCCAATGAGGGAAAGCATGGAGGTGAAGCAACTGTTGAAGCTGTCCGGCTGATTGCTGATTCTGTTAAAAAGCAAAAATGCCA AATGCATCCTGATTCTATTGAGGTATTCATGTCATTGAAATTTGACGAAGATCTCGTGAAGCCTAAAGAAAGGGAAAGCAAAGCTCAGTACAAGAAGAAC AAGAAGAGAAAGAATGCTGAAGAGCCAACCCAAGTGCAACAGAATGACAGGAAAAGAAGTAAAAAAGAAATGATGACAAAGATGAGAGAAGAGGTCGCGG CAGAGTACAAGGCTGCAGCCTTCACACCAGATGTTACCGAGAAGATAAAAATGCAGACCGAGACGCTGTCTGCTGTCTTCGAGACGTATTTCCGTGTACT GAAGGATACGATAAAGTCAACTACAAGCTGTCCTGAAGCAAATGGAAAGTCTGTCAGTATATCCCACCCGCTGCTTGCTCCTTCTCTAAACGGATTGGGA AAGTTCTCTCACCTACTTGATCTAGATTACATTGCAGACCTCATGAATGACTTGAAAAGGCTTGCTGGTGCCGGTGCTAGTTTGGAGAAGCCATCTGATA AGCCCGTAAATGGATTGGCTTTATCTGAACGCCTTCAATGCTGCATAGTTGCGTTCAGAGTCATGAGGATCAACCTTGATGCTCTGAATGTCGATTTACA AGGCTTCTTCGTCCAGCTGTATAATCTTATACTTGAGTACAGACCCGGAAGGGATCAGGGTGAGGTGTTAGCTGACGCATTGAAGATTATGCTCTGTGAT GATAGACATCATGATATGCAGAAAGCTGCTGCATTCGCGAAACGTCTTGCCACGTTCTCGCTCTGCGTTGGACCAGCCGAGTCAATGGCCGCACTGGTGA CTGTGAGACATCTACTCTTGAAGAATGTCAAGTGTCGTAACTTGTTGGAAAACGATGCCGGTGGAGGGTCAGTCTCTGGCATGATCGCGAGATACCATCC GTATGCTTCGGATCCCAACTTAAGCGGCGCACTTGCTTCGGTACTGTGGGAGCTCAACCTTGCCTCGAAACATTACAACCCGGCAATCTCGGCTGCTGCC TCGGGGATCGCGACTATGAGCGCCGCTCCTGGCCAAGCGTACCTCACCATCAACTCTCCACAGCAGGCGTTCAAAGATCTGTCGCTCGAGAAGGAATCGT TCAGCCTGCCGATCACTGCTGGGAAACCAAGCAGCAAGAAGAACAAACCCAACAAAGGGGCGGCTCCCAGTAGCTTCGAAATGGATGCCGGAACATTGGA CGAAGAAGAGTTGAAGAGGAAATTCTCTGAGCATTTCAGAGTGCTTGAAGAACTCAAGGAGAATGAGAGAGCAAGGAAGGAACTAGCTCGTACTAGTCTA GATGTACAATTGTACCAGGAGTATAAGCTGCAGAAGAAGAAGAAGAAGAAAGTAAGAAAGGCATGCAGTTGA
AA sequence Show only first row Show all	>Lus10034234 pacid=23176123 polypeptide=Lus10034234 locus=Lus10034234.g ID=Lus10034234.BGIv1.0 annot-version=v1.0 MAVLVYCLATSDVASSNIIIRDDLKNVIKEGSPASRFLLAFSRRSSSSCQNFVFRSSPFVGLPPSGVSVQFVPTSVVFLSPLFIQLVRMGRKKQQKKTVL PPALPPEVPEDEIEVSDEDLEFVAKNQDFAGFLTKLDTRTIDKHVNRVTDAKGKKVEDDALEALYEERLRKRSIEDEKKEKKVEVDPVHELPVKTLDGQL YYVKKSEDKRTEDGEDGDDQKDIGMIRLTKAEKRAKFKKARKEAKKLADFSTEAEETVDEEAPPQAAALAEIKKDLTAEEVFESKKQKLAELGLALQADP EENIKLLKELLQLCRDHDPNIVKLSVLSLLAVFKSIIPGYRIRLPTDKELEMKVSKEVKKTRFYESTLLSTYKAYLQRLVVLQKDSKFQHVAVRCLCTML DAAPHFNFWEGLLTAVVANIGSPDDVIRRLSCETVKSLFSNEGKHGGEATVEAVRLIADSVKKQKCQMHPDSIEVFMSLKFDEDLVKPKERESKAQYKKN KKRKNAEEPTQVQQNDRKRSKKEMMTKMREEVAAEYKAAAFTPDVTEKIKMQTETLSAVFETYFRVLKDTIKSTTSCPEANGKSVSISHPLLAPSLNGLG KFSHLLDLDYIADLMNDLKRLAGAGASLEKPSDKPVNGLALSERLQCCIVAFRVMRINLDALNVDLQGFFVQLYNLILEYRPGRDQGEVLADALKIMLCD DRHHDMQKAAAFAKRLATFSLCVGPAESMAALVTVRHLLLKNVKCRNLLENDAGGGSVSGMIARYHPYASDPNLSGALASVLWELNLASKHYNPAISAAA SGIATMSAAPGQAYLTINSPQQAFKDLSLEKESFSLPITAGKPSSKKNKPNKGAAPSSFEMDAGTLDEEELKRKFSEHFRVLEELKENERARKELARTSL DVQLYQEYKLQKKKKKKVRKACS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79150			binding (.1)		Lus10034234 [exp]	0	1
AT1G05055		ATGTF2H2, GTF2H...	general transcription factor I...		Lus10016248 [exp]	1.0	0.9470
AT3G05510			Phospholipid/glycerol acyltran...		Lus10020650 [exp]	4.0	0.9137
AT5G53620			unknown protein		Lus10008846 [exp]	4.5	0.9275
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	5.3	0.9382
AT2G27460			sec23/sec24 transport family p...		Lus10020622 [exp]	5.3	0.9151
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Lus10029500 [exp]	6.5	0.9253
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10031212 [exp]	6.7	0.9352
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10018357 [exp]	6.9	0.9093
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10031481 [exp]	10.2	0.9268
AT1G26370		RID1	RNA helicase family protein (....		Lus10037067 [exp]	10.2	0.9061

Compare expression of checked genes

Lus10034234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.