Plant FIBer expression Database

Lus10034235 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56360 149 / 1e-44 unknown protein
AT5G05250 134 / 5e-39 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029031
[exp]
288 / 7e-99 AT3G56360 132 / 2e-37 unknown protein
Lus10030528
[exp]
225 / 1e-74 AT5G05250 147 / 1e-43 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G058000
[exp]
174 / 1e-54 AT3G56360 162 / 9e-50 unknown protein
PFAM info
Representative CDS sequence
>Lus10034235 pacid=23175916 polypeptide=Lus10034235 locus=Lus10034235.g ID=Lus10034235.BGIv1.0 annot-version=v1.0
ATGGCTTCTTCTGCCGGAATCCGCTGCGGCGGAGGAGCAATCGAATTGAAGAATCACCACCGCCGTCTATTCCCTAATCAGGCAGCGGCGACGCTTCCGA
TCAGGACGGCGATGTGCAATACGGATCGGAGATCGCGGAGGCTGGGAGTGTCCGTCTCCGCATCGGCGATGGCGGAGACTTCGGGGAGAGGGATCGCGGC
GGAGAATATGGATACGTGGCTGAGGGATTCGGTGACGGAGATCGTGAACAACCTGGCGGAGGCGCCGCTGCTGGTGCAGGTGTACGCCGATGAAGGGAAG
AAGAAATTGGACACGGAGAAAGCGGTGGAGGAAGGGGATTGGAAGAGGCTGATCGAAAAATGGAAGAAGAGGGATTCGCCGCAGCCGGATGGGGTGATAT
TCGTCGAGCAGTTGAACGACGGCGGCGAGGAGGCGGCAGAGGCGTGGGGGGTCGTGGTGCAGGGGAAAGGAGGGGAGTGCGGTGGGCCAGCGTGCTACTT
GTTGAAGACGAGCCGGGTCGGGTCGGGAGTGGGCCTGGGATGCACCCATTTCTGCTTGATGCGGGTCAAGAGCTTTCGGGAGAGCGCCAAGTCGCAGCTG
AAGAACTGCTGGCTGTTGCAGCCCCAATACGGTACGGATCCAGTGTGCTGA
AA sequence
>Lus10034235 pacid=23175916 polypeptide=Lus10034235 locus=Lus10034235.g ID=Lus10034235.BGIv1.0 annot-version=v1.0
MASSAGIRCGGGAIELKNHHRRLFPNQAAATLPIRTAMCNTDRRSRRLGVSVSASAMAETSGRGIAAENMDTWLRDSVTEIVNNLAEAPLLVQVYADEGK
KKLDTEKAVEEGDWKRLIEKWKKRDSPQPDGVIFVEQLNDGGEEAAEAWGVVVQGKGGECGGPACYLLKTSRVGSGVGLGCTHFCLMRVKSFRESAKSQL
KNCWLLQPQYGTDPVC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G56360 unknown protein Lus10034235
[exp]
0 1
AT5G53450 ORG1 OBP3-responsive gene 1 (.1.2) Lus10038813
[exp]
9.9 0.8902
AT3G12750 ZIP1 zinc transporter 1 precursor (... Lus10024107
[exp]
22.7 0.8441
AT5G53450 ORG1 OBP3-responsive gene 1 (.1.2) Lus10014920
[exp]
27.7 0.8728
AT4G19110 Protein kinase superfamily pro... Lus10038123
[exp]
28.2 0.8315
AT2G37770 ChlAKR, AKR4C9 Chloroplastic aldo-keto reduct... Lus10024354
[exp]
31.6 0.8586
AT4G12520 Bifunctional inhibitor/lipid-t... Lus10010765
[exp]
31.6 0.8274
AT1G68360 C2H2ZnF C2H2 and C2HC zinc fingers sup... Lus10029204
[exp]
43.1 0.7878
AT4G24700 unknown protein Lus10017951
[exp]
84.5 0.7912
AT1G14780 MAC/Perforin domain-containing... Lus10037426
[exp]
88.2 0.8145
Lus10010270
[exp]
90.0 0.8225

Lus10034235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.