Plant FIBer expression Database

Lus10034236 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05240 276 / 8e-86 Uncharacterised conserved protein (UCP030365) (.1)
AT2G40630 128 / 2e-31 Uncharacterised conserved protein (UCP030365) (.1)
AT5G65120 43 / 0.0005 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029030
[exp]
973 / 0 AT5G05240 313 / 4e-100 Uncharacterised conserved protein (UCP030365) (.1)
Lus10030527
[exp]
149 / 6e-40 AT2G40630 169 / 6e-48 Uncharacterised conserved protein (UCP030365) (.1)
Lus10016802
[exp]
49 / 5e-06 AT5G65120 160 / 2e-46 unknown protein
Lus10022498
[exp]
47 / 2e-05 AT5G10110 164 / 7e-48 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G058200
[exp]
439 / 2e-148 AT5G05240 301 / 2e-95 Uncharacterised conserved protein (UCP030365) (.1)
Potri.013G091100
[exp]
200 / 2e-57 AT5G05240 259 / 3e-80 Uncharacterised conserved protein (UCP030365) (.1)
Potri.013G157700
[exp]
95 / 5e-21 AT5G05240 103 / 8e-24 Uncharacterised conserved protein (UCP030365) (.1)
Potri.007G090500
[exp]
51 / 1e-06 AT5G65120 176 / 2e-52 unknown protein
Potri.005G077400
[exp]
45 / 0.0001 AT5G10110 150 / 2e-42 unknown protein
PFAM info
Representative CDS sequence
>Lus10034236 pacid=23175932 polypeptide=Lus10034236 locus=Lus10034236.g ID=Lus10034236.BGIv1.0 annot-version=v1.0
ATGGAGGAGCAAGCCGATTATTGGGTTCCGGAGAGATCTACTGCTTCTAAGATGGTCGGCGATAAGCGAGGCTGTGACGAATTGGGGGCGGGAGATCAGG
AGCTTACTTGCAGACGAGTTAAAATGAAAAATCTGGACTCTGTGTTGACTGCTAAAGGTGGAGATTCTTCTCAAATTGAAAGAAGTGTGACGACGAGTTT
GACGAGGTCAGCTGAAGTTAATCATGTCCCGGGACAGTTGGATCTCAATAGTGAAGCTTGTATCGGGCGTGTACATAACAAATCTATGATGATGTCTCAA
GGAGTGTGTTTGGATCTCAACTCAGAAGACATGGCTAGCTCGGTTGTGAACAGCCACCGGTTTTACCCGAGCAAGAGTCAAAAAAGCAGGCAGAAACAGA
GTGATAATGTGTCTGAATGCGCGAGTGCTATAGGTGGTTCTCCCATGGTGGTGGTGGATAAAGATCCGTTGAAAGTTTGGAAGGAGATGAAGCAGAACGG
GTTCCTGTCGTCTCCTCATGGCGGGATATCGAGCCACAGCAATCTTGTCTCGAATTCTTCTTCTTCGCAAGGACTCCATGCCCCTCATGGAGGAGTACCG
GTGCCTAAGCAACGCGGGAGGAAGCCGAAGAACGACACCATGAAGAGAAGAATGGAGCTTGCGAAAAAAGAGCAGGTGGATAGGTTCACAAAGATTGCAG
CTCCCAGTGGTCTGTTGAATGATTTGAACCCCGGGATTATTAATCATGTTAGAAACAGCAGACAGGTCCGCTCGATAATCGAGGGCTTAGTGAAGTCCGA
GAAGCTCGACAACAGTCGTACAGAGAGTCAGAGGGCCGGAAGCAAAGAGCCTGCTGGGATGATGACTAGCTCACATGGTTATGATTCGAACTTATTCTCT
AGTGGGAATGAATGCTCTGCTGCTGTTTTTGGAAGCAAACAAATGAGAGCAGGATTCAAGGTATCAAGCAGAGAGGGTAATTCCAGCACTGTAGGGGAGA
TCCCTGGCGAAAGTACTCTCTCGTACTCTCGCCCTGTTGAAGAAAATGATAATACACCACCGTTTGTAAACTTATCGTCTTCAATCAAGGTGTCCGGGGA
ATCTAGCAGTGTTTCTAACAATGAATCTGCAGATGTCACCAATGCCTCCTCTCTCTCTGTCAAAGCTGCAAGTGTTGCTTCACAGTGGTTGGAGCTACTT
CAGCAAGACATCAAAGGACGCCTAACTGCTTTGCGTCGCAGCAAGAAGAGGGTGAGGGACGTCATAACAACCGACTTACCTTTGTTAGTATCGAAAGAAT
TCGGCTCCTCCAACCAAGAAAATGATCCTCACGCTGCTGCTTCTCCTCCGGTCTCCCTTAACGCAACTGCTGCGATGCATCAAGCAAGATGGACCCAGTT
GTTTGATCAAATGGATAAAGCACTCGCTGAGGAACAAAGGCAGCTTGAAAGTTGGCTGAACCAGTTGAAAGAAATGCAACTGCACTGTGATCAGGGCTTG
CAGCATTTCCAATGGAACGCTATTGTCGGATTCCAACCCCCGGGGATGCCCGAACACTACAGAATCCCAAAGCCGGATAGCTCAGAGAAGGAACTGGCCG
TGAGGGCAGCTGCAGCTTCGATATATTCAACATGCAATTTCTTGACATCGAAGGAGAATGTATCGTGTTTCTGA
AA sequence
>Lus10034236 pacid=23175932 polypeptide=Lus10034236 locus=Lus10034236.g ID=Lus10034236.BGIv1.0 annot-version=v1.0
MEEQADYWVPERSTASKMVGDKRGCDELGAGDQELTCRRVKMKNLDSVLTAKGGDSSQIERSVTTSLTRSAEVNHVPGQLDLNSEACIGRVHNKSMMMSQ
GVCLDLNSEDMASSVVNSHRFYPSKSQKSRQKQSDNVSECASAIGGSPMVVVDKDPLKVWKEMKQNGFLSSPHGGISSHSNLVSNSSSSQGLHAPHGGVP
VPKQRGRKPKNDTMKRRMELAKKEQVDRFTKIAAPSGLLNDLNPGIINHVRNSRQVRSIIEGLVKSEKLDNSRTESQRAGSKEPAGMMTSSHGYDSNLFS
SGNECSAAVFGSKQMRAGFKVSSREGNSSTVGEIPGESTLSYSRPVEENDNTPPFVNLSSSIKVSGESSSVSNNESADVTNASSLSVKAASVASQWLELL
QQDIKGRLTALRRSKKRVRDVITTDLPLLVSKEFGSSNQENDPHAAASPPVSLNATAAMHQARWTQLFDQMDKALAEEQRQLESWLNQLKEMQLHCDQGL
QHFQWNAIVGFQPPGMPEHYRIPKPDSSEKELAVRAAAASIYSTCNFLTSKENVSCF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G05240 Uncharacterised conserved prot... Lus10034236
[exp]
0 1
AT3G30300 O-fucosyltransferase family pr... Lus10034356
[exp]
5.7 0.8762
AT5G05940 ATROPGEF5, ROPG... ROP guanine nucleotide exchang... Lus10040248
[exp]
8.0 0.9197
AT2G31320 ATPARP2 poly(ADP-ribose) polymerase 2 ... Lus10033871
[exp]
12.2 0.9030
AT5G63110 RPD3B, CAT1, AX... RNA-MEDIATED TRANSCRIPTIONAL S... Lus10019486
[exp]
14.1 0.8812
AT4G32730 MYB ATMYB3R-1, PC-M... C-MYB-LIKE TRANSCRIPTION FACTO... Lus10022136
[exp]
18.1 0.8902
AT5G63950 CHR24 chromatin remodeling 24 (.1) Lus10037696
[exp]
20.4 0.8973
AT2G04660 APC2 anaphase-promoting complex/cyc... Lus10030444
[exp]
20.5 0.8808
AT2G34190 Xanthine/uracil permease famil... Lus10007289
[exp]
20.8 0.8605
AT5G27550 P-loop containing nucleoside t... Lus10004487
[exp]
23.5 0.8973
AT1G02730 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLU... Lus10010024
[exp]
28.5 0.8960

Lus10034236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.