Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05230 220 / 4e-68 RING/U-box superfamily protein (.1) AT2G40640 209 / 1e-63 RING/U-box superfamily protein (.1.2.3) AT3G19895 147 / 6e-39 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029029 [exp] 513 / 0 AT5G05230 197 / 2e-59 RING/U-box superfamily protein (.1) Lus10034201 [exp] 139 / 6e-36 AT3G19895 662 / 0.0 RING/U-box superfamily protein (.1) Lus10000199 [exp] 56 / 1e-08 AT3G19895 352 / 3e-119 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G058300 [exp] 303 / 2e-99 AT5G05230 285 / 1e-92 RING/U-box superfamily protein (.1) Potri.008G085700 [exp] 146 / 2e-38 AT3G19895 707 / 0.0 RING/U-box superfamily protein (.1) Potri.010G171100 [exp] 138 / 1e-35 AT3G19895 701 / 0.0 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034237 pacid=23176010 polypeptide=Lus10034237 locus=Lus10034237.g ID=Lus10034237.BGIv1.0 annot-version=v1.0 ATGTCGACCAATGTCTCTTCTTCTCAGAACAGCCTCAATTCCCAGCTCATCTACCAAGATCAAATCCCGTTGGGCTTCACTTCTCAGCGTCCGATCGGCG ATCCGGGTCCTAAAACCCGAGAGCTCGCCGGTTTCATCGACGACAAGATGTTACCCTCTTCTTCCTGTCCCGGAGCAACCAACTGCTACTTCGCCCCCGA TCGACAACACCGCCGAGGTCCCGATGTCTACCGCCGTGATCGTGATTGGAATGCCAATGGGAACGAAACCAGCGGCGATGATGACTCGGTGGATGATGAT GGTGACGATGAAGACGACGAGGAGGAGCTGGATGACGATGAGGAAGCTGGAGGAACTCTAGGCGTTAGTGTTAGTGATAAACACAATGGCAGTAACAACG AGAAGACCAGTAACAGTAACAGCGATTGTAATCACGGTGGTGGAGGGTCTAGTGGGGCAGTGATGGTATTAAAAGATGGAGGTGATGGAGGAAGAACTGC AAATGCAGGAGTAACAGTAGCAAACCTGGATGGTGAAATGTTGTATTCACGGTACATGGAAACAGCAGATGGTTCTAGTGGCAGGAGGAAGGATGGTTCT TCGTTAGCAAATGAGTCAGGAGAGTCGTTGAGGGCGATTCTATCGGATCCTGTGACGAGAGCTCTGATGGATGATGCAATGATACTGTTGTGTGGCCATT CGTTTGGAAATGGGGGTGTACAGCATGCTCTAAGAATGTTCTTTGTTCAAACCCTGCTTGTTTTTTGTGCATTAAGAGGTACTGACATAGTTCTTACTTT GACTGAACTTCAGAAATCTTGCTATACTTGTTCGAGGCTAGTTTCAGAAGAATCAATATCTCCTAATCTCGCACTACGGGCTGCTGTACAGGCATACCGG CGAGAAGAGGAGTTACAAAATTTCCGGTCACCCAAGAGGAGGAGAGACAGATTTGAGGAGAGGGGTAGTTATGGTGATGCAAACTCCATGGATCCACCAA GGGGTAGAGGTGTTCAGTTCCCATTCTCTGTTACTGACCGAGTCGTAATAAAGGGAAACAAAAGGACACCAGAGCGTTTTGTGGGACGCGAGGCTATTGT TACCACACAATGCTTAAATGGATGGTACGTGGTTAAGACCTTGGACAATGCCGAGAGCGTAAAATTGCAATATCGATCCCTGGCTAAAGTTACAGACGGT TCATCTTCAAAGCACTTGTTAAGTAAGATGACTCCCACTTGGGTATAG
AA sequence Show only first row Show all	>Lus10034237 pacid=23176010 polypeptide=Lus10034237 locus=Lus10034237.g ID=Lus10034237.BGIv1.0 annot-version=v1.0 MSTNVSSSQNSLNSQLIYQDQIPLGFTSQRPIGDPGPKTRELAGFIDDKMLPSSSCPGATNCYFAPDRQHRRGPDVYRRDRDWNANGNETSGDDDSVDDD GDDEDDEEELDDDEEAGGTLGVSVSDKHNGSNNEKTSNSNSDCNHGGGGSSGAVMVLKDGGDGGRTANAGVTVANLDGEMLYSRYMETADGSSGRRKDGS SLANESGESLRAILSDPVTRALMDDAMILLCGHSFGNGGVQHALRMFFVQTLLVFCALRGTDIVLTLTELQKSCYTCSRLVSEESISPNLALRAAVQAYR REEELQNFRSPKRRRDRFEERGSYGDANSMDPPRGRGVQFPFSVTDRVVIKGNKRTPERFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVTDG SSSKHLLSKMTPTWV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05230			RING/U-box superfamily protein...		Lus10034237 [exp]	0	1
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Lus10040267 [exp]	1.0	0.7608
AT4G03630			RNI-like superfamily protein (...		Lus10008704 [exp]	8.0	0.6659
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10030002 [exp]	9.4	0.7250
AT3G27260		GTE8	global transcription factor gr...		Lus10032076 [exp]	13.9	0.7243
AT3G13670			Protein kinase family protein ...		Lus10039203 [exp]	18.9	0.7191
					Lus10013070 [exp]	23.0	0.6570
AT4G25550			Cleavage/polyadenylation speci...		Lus10038867 [exp]	30.1	0.6764
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10020315 [exp]	36.2	0.6467
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10002832 [exp]	49.8	0.6102
AT3G06240			F-box family protein (.1)		Lus10038603 [exp]	55.0	0.6170

Compare expression of checked genes

Lus10034237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.