Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40690 537 / 0 SFD1, GLY1 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) AT5G40610 98 / 5e-22 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) AT3G56380 60 / 1e-10 ARR17 response regulator 17 (.1) AT2G40670 54 / 2e-08 ARR16 response regulator 16 (.1.2) AT3G57040 51 / 4e-07 ATRR4, ARR9 RESPONSE REGULATOR 4, response regulator 9 (.1) AT2G41310 50 / 7e-07 ARR8, ATRR3 RESPONSE REGULATOR 8, response regulator 3 (.1) AT1G74890 48 / 4e-06 ARR15 response regulator 15 (.1) AT1G19050 45 / 3e-05 ARR7 response regulator 7 (.1) AT1G10470 43 / 0.0002 IBC7, ATRR1, ARR4, MEE7 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) AT5G62920 41 / 0.0007 ARR6 response regulator 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029028 [exp] 625 / 0 AT2G40690 625 / 0.0 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Lus10022308 [exp] 100 / 1e-22 AT5G40610 607 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Lus10014889 [exp] 98 / 4e-22 AT5G40610 609 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Lus10036642 [exp] 50 / 1e-06 AT1G19050 160 / 6e-50 response regulator 7 (.1) Lus10042938 [exp] 47 / 8e-06 AT1G19050 153 / 7e-47 response regulator 7 (.1) Lus10010723 [exp] 47 / 1e-05 AT1G10470 155 / 1e-46 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10039524 [exp] 42 / 0.0007 AT3G57040 222 / 2e-73 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10029027 [exp] 0 / 1 AT3G56380 121 / 4e-36 response regulator 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G090900 [exp] 553 / 0 AT2G40690 612 / 0.0 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Potri.017G070900 [exp] 96 / 2e-21 AT5G40610 613 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Potri.019G133600 [exp] 63 / 1e-11 AT3G56380 183 / 2e-60 response regulator 17 (.1) Potri.019G058900 [exp] 57 / 1e-09 AT3G56380 223 / 5e-76 response regulator 17 (.1) Potri.016G038000 [exp] 47 / 1e-05 AT2G41310 242 / 2e-81 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.006G041100 [exp] 47 / 1e-05 AT3G57040 273 / 4e-93 RESPONSE REGULATOR 4, response regulator 9 (.1) Potri.015G070000 [exp] 46 / 2e-05 AT3G48100 231 / 1e-77 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [flax] [poplar] 6PGD_C PF07479 [flax] [poplar] NAD_Gly3P_dh_C NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CL0063 [flax] [poplar] NADP_Rossmann PF01210 [flax] [poplar] NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
Representative CDS sequence Show only first row Show all	>Lus10034238 pacid=23176131 polypeptide=Lus10034238 locus=Lus10034238.g ID=Lus10034238.BGIv1.0 annot-version=v1.0 ATGGACGTCGGAAGCAGAGGAGTCTTCGTTGCCGCTGGCAGGAATACAAGGTCCGATAATGCAGAATCCACGACGGTGATGCATGTCCTGGCCGTCGATG ACAACCTCGTTGAACGGAAACTCCTCGAACGCCTCCTAAAAAACGTCTCTTCTTGCACCGTAACAACTGTTGAGAACGGAGCGAAGGCATTGGAGTATCT GCGGTTGCATCAAGAACATGATGATAGGGATGATGAATCGAGTGACTTGAAGGGAGTCCCGGTCGTGGTTGTTTCATCTGAGAATATTCCGACCCGTGTC AATCAGAGCAGAGATGTTTATGGTGAAGCCATTGAAGCAGTCGGATGTCAACAAGCTGATAATGGCACCTCGATTGATGACCAATCAGTGCTAATCAGTG CTAGGCTGATTCTTTCTGCTAAAAACTCTGTGGTGGTTCTTGGAGGAGGTTCATTCGGTAGATCCGTGGCTGCTCATGTGGCTAGTAGGAAATCCGATTT GGAGGTCCACATGCTGCTTCGTGACGAATTGCTCTGCCAATCTATCAATCTCCATAACTGTAATCGCAAGTATTTCCCTCAACACAAGCTCCCAGTTAAC CTAATTGCTACCACCGATCCCAAAACTGCGATGCTCGGTGCGGACTACTGCTTTCACGCAGTGCCAGTCCAGTTTAGCTCGACGTTCCTTGAGACCATTG CATATAGTGTTGATCCTGGATTACCTTTCATATCTCTAAGTAAAGGGTTGGAGCTTAACACATTGAGGACCATGTCTCAGATTATCCCTAAAGCTTTAAA GAACCCTCGCCAGCCTTTTGTTGCTCTCTCTGGACCTTCTTTTGCTCTTGAATTGATGAACAAGTTGCCAACAGCAATGGTGGTGGCTTCAAAGGATAGG AAGCTAGCAAATGCTGCTCGGCAACTGCTCGCTTCGTCTCATTTACGAATCAGCACGTCCAGTTATGTCACAGGGGTGAAAACTGCAGGTGCACTGAAAA TTGTACTCGCCATAGCGACTGGTATTGTTGAAGGCATGAATCTTGGTAATAATTCCATGGCAGCTCTTGTTACTCAAGGTTGTTCCGAGATCCGGTGGCT AGCAACAAAGATGGAGGCGAAACCAGCTACACTCTCTGGTCTTTCTGGCATGGGAGACATTATGCTTACATGTTTCATAAATCTAAGAAACAGGACGGTT GGAGTTCGCCTCGGATCAGGGGAGAGTCTTGATTCCATATTGAATTCCATGAATCAGGTTGCAGAAGGTGTATCAACAGCTGGTGTTGTGGTTGCATTAG CTCAGAAGTACGAGGTCAAGATGCCGGTTCTGACAGCAGTCGCTCGGATCATAGACAACGAGCTGACATCACATGAGACCGTTTTCGAATTGATGAGCCT TCCTCAGGTCGAAGAAGTGTGA
AA sequence Show only first row Show all	>Lus10034238 pacid=23176131 polypeptide=Lus10034238 locus=Lus10034238.g ID=Lus10034238.BGIv1.0 annot-version=v1.0 MDVGSRGVFVAAGRNTRSDNAESTTVMHVLAVDDNLVERKLLERLLKNVSSCTVTTVENGAKALEYLRLHQEHDDRDDESSDLKGVPVVVVSSENIPTRV NQSRDVYGEAIEAVGCQQADNGTSIDDQSVLISARLILSAKNSVVVLGGGSFGRSVAAHVASRKSDLEVHMLLRDELLCQSINLHNCNRKYFPQHKLPVN LIATTDPKTAMLGADYCFHAVPVQFSSTFLETIAYSVDPGLPFISLSKGLELNTLRTMSQIIPKALKNPRQPFVALSGPSFALELMNKLPTAMVVASKDR KLANAARQLLASSHLRISTSSYVTGVKTAGALKIVLAIATGIVEGMNLGNNSMAALVTQGCSEIRWLATKMEAKPATLSGLSGMGDIMLTCFINLRNRTV GVRLGSGESLDSILNSMNQVAEGVSTAGVVVALAQKYEVKMPVLTAVARIIDNELTSHETVFELMSLPQVEEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Lus10034238 [exp]	0	1
AT4G32790			Exostosin family protein (.1)		Lus10014425 [exp]	1.7	0.8645
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10017587 [exp]	2.4	0.8569
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039482 [exp]	2.8	0.7842
AT5G25820			Exostosin family protein (.1)		Lus10014424 [exp]	3.0	0.8563
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033737 [exp]	4.0	0.8288
					Lus10029758 [exp]	4.5	0.8251
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10018301 [exp]	13.9	0.8121
AT5G25820			Exostosin family protein (.1)		Lus10023927 [exp]	15.3	0.7835
AT1G55790			Domain of unknown function (DU...		Lus10032898 [exp]	16.6	0.6745
					Lus10015310 [exp]	17.7	0.7586

Compare expression of checked genes

Lus10034238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.