Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40660 412 / 9e-143 Nucleic acid-binding, OB-fold-like protein (.1) AT4G13780 169 / 9e-46 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) AT3G59980 114 / 7e-29 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029026 [exp] 685 / 0 AT2G40660 424 / 1e-147 Nucleic acid-binding, OB-fold-like protein (.1) Lus10016658 [exp] 177 / 9e-49 AT4G13780 1280 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10022571 [exp] 177 / 2e-48 AT4G13780 1280 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10027077 [exp] 120 / 6e-31 AT3G59980 284 / 4e-96 Nucleic acid-binding, OB-fold-like protein (.1) Lus10025611 [exp] 117 / 1e-29 AT3G59980 280 / 3e-94 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G058700 [exp] 484 / 3e-171 AT2G40660 396 / 6e-137 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G317500 [exp] 175 / 7e-48 AT4G13780 1260 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Potri.017G057700 [exp] 173 / 2e-47 AT4G13780 1255 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Potri.017G000200 [exp] 122 / 8e-32 AT3G59980 276 / 6e-93 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01588 [flax] [poplar] tRNA_bind Putative tRNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10034239 pacid=23175863 polypeptide=Lus10034239 locus=Lus10034239.g ID=Lus10034239.BGIv1.0 annot-version=v1.0 ATGGCTGGTAATGGAGCCCTCACCGCGGAAAGAAAGCAGAAGCTAGCATCAGCTCTCTGCAAGCACTTCTGTGTATCGCCTCTGGGCGATGTTGGGAACT CCGATGTGAAGAGTTTGTACGACGGAATCCTGAAGTCATCAGGGAAATCCGCTCCATCGAATGTACACGACGAGGTGATGAAGTGGATAGGCTTTGCAGA GAGTTTTCCTCAAGACTCTAATGCATGCAGTCAAGCTCTCAAGGGATTGAACGAAGAGCTGCTTACGAAGTCTGTACTTTTGGGGAATGGGTTGACGCCG TCTGCAGCTGATGTTATTGTGTTCTCTGCCATACATTCTGCCGTGATTGACCTTCCAAAGTCCAAGAGCGAAGAATTGGTGCATGTATACAGATGGATGG ATTACGTACAGCACAGGGAAGACTTCGGAGAAATATTTGAGAAAATACCACTAGAGAAGGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGA AGACTTCGGAGAAATATTTAAGAAAATACCACTAGAGAAGGAACGACTGTACCCACAGGTGCAAGACAAACCCAGTGCAGCAAAAGTTGAAGTAGAATCA AATGCTAAGAAGACTGGACAAGACTCAAAGAAGACAGAGAAGGTAGAAGCTGCCCAAAGTGCTAGCAAAAGTGAAACTAAGAATGCTAAGACAAAGGGGC AAGCAAATAAGGAATCTACAGAGGAGAAGAAGAAACCAGCTCCAGTAGAAGCTGCAGCAGAGAAAGATAAAGAATTAAGTGTTAGTTTGCTTAATATAAA GGTCGGCCTTATTCGCAAAGTATGGAAACATCCATCAGCTGATAGTTTATTAGTTGAAGAAATAGATGTTGGGGAAGCTAAGGTGAGACAGGTGGTTAGT GGGTTGGCAAAGTATTTCAGTCCAGAGCAGTTGACAAACCGCCGTGTTGTGCTGATAACAAATGTAAAACCAGGAAAGCTCCGAGATGTGATGTCAGAAG GATTGGTTTTATGTGCTTCTAGTGAAGACCACACTACCGTGGAACCATTACTTCCTCCAGAAGGTGCCAAAATCGGAGAACGCATAACATTCTCTGGGAT CGATGGCAAGCCAGAAGATGTCCTCAACCCAAAAAAGAAGCAGTTGGACAAAATAACACCGAATCTATACACGGATGACAAAGGTGTGGCCACGTTCAAG GGCGTACCTTTCATGACTTCTGGTGGACCTTGCACATCTTCCATCTCGAAGGGAAGCATCAAATGA
AA sequence Show only first row Show all	>Lus10034239 pacid=23175863 polypeptide=Lus10034239 locus=Lus10034239.g ID=Lus10034239.BGIv1.0 annot-version=v1.0 MAGNGALTAERKQKLASALCKHFCVSPLGDVGNSDVKSLYDGILKSSGKSAPSNVHDEVMKWIGFAESFPQDSNACSQALKGLNEELLTKSVLLGNGLTP SAADVIVFSAIHSAVIDLPKSKSEELVHVYRWMDYVQHREDFGEIFEKIPLEKEXXXXXXXXXXXXEDFGEIFKKIPLEKERLYPQVQDKPSAAKVEVES NAKKTGQDSKKTEKVEAAQSASKSETKNAKTKGQANKESTEEKKKPAPVEAAAEKDKELSVSLLNIKVGLIRKVWKHPSADSLLVEEIDVGEAKVRQVVS GLAKYFSPEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASSEDHTTVEPLLPPEGAKIGERITFSGIDGKPEDVLNPKKKQLDKITPNLYTDDKGVATFK GVPFMTSGGPCTSSISKGSIK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40660			Nucleic acid-binding, OB-fold-...		Lus10034239 [exp]	0	1
AT5G27470			seryl-tRNA synthetase / serine...		Lus10010211 [exp]	2.4	0.8340
AT3G23620			Ribosomal RNA processing Brix ...		Lus10027714 [exp]	4.1	0.8364
AT2G26810			Putative methyltransferase fam...		Lus10026822 [exp]	6.2	0.7647
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10018666 [exp]	6.7	0.8188
AT5G63890		HISN8, ATHDH	HISTIDINE BIOSYNTHESIS 8, hist...		Lus10031985 [exp]	9.5	0.8023
AT4G04190			unknown protein		Lus10020577 [exp]	9.5	0.8167
AT1G57720			Translation elongation factor ...		Lus10033213 [exp]	9.8	0.7692
AT1G15420			unknown protein		Lus10007894 [exp]	10.8	0.8328
AT2G18400			ribosomal protein L6 family pr...		Lus10026015 [exp]	11.2	0.8171
AT3G56570			SET domain-containing protein ...		Lus10026538 [exp]	13.2	0.7253

Compare expression of checked genes

Lus10034239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.