Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40730 1170 / 0 CTEXP cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1) AT1G71410 69 / 1e-11 ARM repeat superfamily protein (.1) AT1G22870 69 / 1e-11 Protein kinase family protein with ARM repeat domain (.1) AT5G66850 49 / 1e-05 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029025 [exp] 1485 / 0 AT2G40730 1221 / 0.0 cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G090500 [exp] 1238 / 0 AT2G40730 1144 / 0.0 cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1) Potri.019G059200 [exp] 1221 / 0 AT2G40730 1172 / 0.0 cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1) Potri.013G098700 [exp] 75 / 1e-13 AT1G71410 1177 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10034240 pacid=23176003 polypeptide=Lus10034240 locus=Lus10034240.g ID=Lus10034240.BGIv1.0 annot-version=v1.0 ATGCTGAAATTCCTTAAAGGAGTTGTGGCTGGATCTGGGACTGGGATCAAGGATCTCCCTTACAACATCGGCGAACCTTACCCTTCCGCCTGGGGTTCTT GGACTCACCACCGCGGCACCTCCAAGGATGATGGTTCTGTAGTGTCAATATTTTGCCTCTCTGGAAGTAGTGCTCAGGATGGACATTTAGCAGCTGGGCG GAATGGTATCAAGCGTCTTCGAACTGTTAGGCACCCTAATATCCTGTCCTTCCTTCATAGTACCGAGCTTGAAGCTTTTGATGGCTCTATGTCGAAGGTT TCTTTATACATAGTCACCGAGCCTGTTATGCCACTTTCTGAGAAGATTAAGGAGCTTGGTTTGGAAGGCACACAAAGGGATGAGTATTATGCATGGGGGC TGAACCAGATTGCTAAAGCCGTGAGCTTTTTGAATAATGATTGTAAACTTGTTCATGGTAATGTTTGCTTGTCCAGTGTTGTTGTCACTCCGACCTTGGA CTGGAAGTTGCATGCTTTTGATGTCCTATCGGAATTTGATGGCAGCAATACAAATGCAGCTGGGCCAATGCTGCAATATGAGTGGTTAATCGGAGCACAA TATAAACCAATGGAGCTTGTGAAGTCTGATTGGCTTACAATCAGAAAATCTCCACCTTGGGCCATTGATGCTTGGGGTTTGGGCTGTTTTATCAATGAAC TTTTTTCTGGTATAAAATTGGCAAAGACGGAGGAGCTACGCAATACTGCAGCCATTCCTAAGTCTTTGCTTCCTGATTATCAACGGCTACTGAGTTCTAT GCCTTCTCGCAGGATGAATGTATCCAAACTTATTGAGAATGGAGAGTACTTCCAGAATAAGTTGGTGGATACTATACATTTTATGGAGATTCTTACCTTG AAAGACAGTGTTGAGAAGGATACATTCTTCCGTAAACTTCCGAATTTAGCAGAGCAGCTTCCTCGTGAAATCGTACTTAAAAAGTTACTTCCTTTATTAG CTTCCTCCCTTGAGTTTGGATCTGCGGCTGCTCCTGCTTTAACTGCGTTGTTGAAGATGGGATCGTGGCTTTCGGCTGAAGAATATACTGTTAAGGTGTT GCCAACAATCGTAAAACTCTTTGCCTCCAATGATCGTGCCATTCGAGTTAGTCTACTTCAGCACATTGACCAATATGGGGAGTCATTATCAGCACAAGTG GTTGATGAGCAGGTATATCCTCATGTCGCCACTGGGTTCTCTGACACATCTGCTTTTCTTCGTGAATTGACTCTTAAATCCATGCTTACATTGGCTCCTA AGCTTTCTCACCGTACTATTTCAGGCTCCCTGTTGAAGTATCTTTCGAAGTTACAGGTTGATGAGGAGCCAGCAATTAGAACAAATACCACCATCTTACT TGGGAATATCGCAACCTACCTGAATGAAGGGACAAGGAAGAGGGTTCTAATCAATGCTTTCACTGTACGTGCACTGCGTGATACCTTTTCCCCTGCAAGG GGAGCTGGAGTAATGGCTTTGTCTGCTACTAGTTCTTATTATGATGCTACGGAAATAGCAACCCGAATTCTTCCAAGTATTGTCGTACTCACCATTGATC CGGATAGTGATGTTCGAATGAAGTCATTTCAAGCTGTTGAGCAATTTTTGCAGATTGTAAAGCAATTCCACGACAAGACGAGTTCGGGAGATGGCGATAC AAGCATCGGAATGTCATCTATACCAGGAAATGCCGGTTTGCTCGGATGGGCAATGAGTTCTTTGACTCTGAAAGGAGGAAAACCTTCTGAACAAGCTCCA CTTTCAACAGCAAATTCGGCCCCTTCTCTCACTACTGTCGTTTCCAATTCCAGCTCTGTGATGGATACTCAAAGTACAGCATTTGACCGCGGAATGTCGA GCATGGGCTTTGCTGATCAACCCGAGCCAAGTTCACCTACTTCAACGGACGGTTGGGGAGATGCCGAAAATGGAATCGGTGAAGATCATAACGACGAGAA GGATGGATGGGACGAGCTTGAGCCTCTTGAAGAAGCGAAACCAACTCCCGCTCTTGCGAGTATCCAAGCTGCTCAGAAACGGCCTGTTGCTCAACCGGTC TCGCAGGCAAAACAACCAGCAACAAGTGTGAGACCAAAGAGTGCCGTCAAGACGCCAAACCAAGAAGACGATGACTTGTGGGGTTCGATGGCAGCCCCTG CCTCGAAAACAGCAGCAAAATCTTTAAACGACGATTTGTGGGGCTCGATCGCAGCACCTCCTCCGAAAAGCGCATCGAGACCTTTGAAAGTCAAATCGAG CTCTTCCCTTGACAGCGACGATCCTTGGGCTGCTATCGCTGCTCCTCCTCCTACCACTCGGGCAAAGCCATTGTCCGCTGGGAGAGGACGAGGATCAAAG CCCGCTGCTCTGAAACTAGGTGCACAGAAGATAAACCGGACCGGGTCATCTGGGGGTTTTTAA
AA sequence Show only first row Show all	>Lus10034240 pacid=23176003 polypeptide=Lus10034240 locus=Lus10034240.g ID=Lus10034240.BGIv1.0 annot-version=v1.0 MLKFLKGVVAGSGTGIKDLPYNIGEPYPSAWGSWTHHRGTSKDDGSVVSIFCLSGSSAQDGHLAAGRNGIKRLRTVRHPNILSFLHSTELEAFDGSMSKV SLYIVTEPVMPLSEKIKELGLEGTQRDEYYAWGLNQIAKAVSFLNNDCKLVHGNVCLSSVVVTPTLDWKLHAFDVLSEFDGSNTNAAGPMLQYEWLIGAQ YKPMELVKSDWLTIRKSPPWAIDAWGLGCFINELFSGIKLAKTEELRNTAAIPKSLLPDYQRLLSSMPSRRMNVSKLIENGEYFQNKLVDTIHFMEILTL KDSVEKDTFFRKLPNLAEQLPREIVLKKLLPLLASSLEFGSAAAPALTALLKMGSWLSAEEYTVKVLPTIVKLFASNDRAIRVSLLQHIDQYGESLSAQV VDEQVYPHVATGFSDTSAFLRELTLKSMLTLAPKLSHRTISGSLLKYLSKLQVDEEPAIRTNTTILLGNIATYLNEGTRKRVLINAFTVRALRDTFSPAR GAGVMALSATSSYYDATEIATRILPSIVVLTIDPDSDVRMKSFQAVEQFLQIVKQFHDKTSSGDGDTSIGMSSIPGNAGLLGWAMSSLTLKGGKPSEQAP LSTANSAPSLTTVVSNSSSVMDTQSTAFDRGMSSMGFADQPEPSSPTSTDGWGDAENGIGEDHNDEKDGWDELEPLEEAKPTPALASIQAAQKRPVAQPV SQAKQPATSVRPKSAVKTPNQEDDDLWGSMAAPASKTAAKSLNDDLWGSIAAPPPKSASRPLKVKSSSSLDSDDPWAAIAAPPPTTRAKPLSAGRGRGSK PAALKLGAQKINRTGSSGGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Lus10034240 [exp]	0	1
AT5G28850			Calcium-binding EF-hand family...		Lus10027963 [exp]	1.4	0.8996
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10012966 [exp]	3.2	0.8984
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10021570 [exp]	3.9	0.8707
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Lus10009531 [exp]	6.3	0.8352
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10034186 [exp]	8.2	0.7728
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Lus10040359 [exp]	8.4	0.8275
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10034941 [exp]	8.5	0.8687
AT2G43240			Nucleotide-sugar transporter f...		Lus10027009 [exp]	9.5	0.8579
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10001661 [exp]	12.2	0.8142
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10030357 [exp]	12.6	0.8659

Compare expression of checked genes

Lus10034240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.