Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50310 191 / 9e-59 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT4G36950 180 / 2e-54 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT5G67080 180 / 3e-54 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT3G46140 173 / 2e-51 Protein kinase superfamily protein (.1) AT5G27510 164 / 7e-49 Protein kinase superfamily protein (.1) AT3G45790 164 / 4e-48 Protein kinase superfamily protein (.1) AT5G55090 162 / 2e-46 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT2G42550 155 / 7e-45 Protein kinase superfamily protein (.1) AT2G41930 155 / 1e-44 Protein kinase superfamily protein (.1) AT3G45670 151 / 7e-43 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026894 [exp] 417 / 2e-148 AT3G50310 187 / 1e-57 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029023 [exp] 378 / 1e-133 AT3G50310 147 / 8e-43 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034285 [exp] 374 / 7e-131 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1) Lus10034246 [exp] 366 / 3e-129 AT4G36950 107 / 7e-28 mitogen-activated protein kinase kinase kinase 21 (.1) Lus10034288 [exp] 356 / 7e-124 AT3G50310 181 / 5e-55 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10039141 [exp] 278 / 3e-93 AT3G46140 168 / 1e-49 Protein kinase superfamily protein (.1) Lus10029019 [exp] 242 / 4e-81 AT3G50310 96 / 3e-24 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029018 [exp] 221 / 7e-73 AT3G46140 52 / 7e-17 Protein kinase superfamily protein (.1) Lus10017114 [exp] 217 / 2e-69 AT3G50310 127 / 3e-34 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G042400 [exp] 197 / 3e-60 AT3G50310 236 / 5e-75 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.003G184200 [exp] 196 / 6e-60 AT4G36950 246 / 8e-79 mitogen-activated protein kinase kinase kinase 21 (.1) Potri.007G044800 [exp] 179 / 4e-54 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.009G131100 [exp] 176 / 2e-53 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.005G139200 [exp] 173 / 2e-51 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.006G181000 [exp] 172 / 3e-51 AT3G45670 213 / 4e-66 Protein kinase superfamily protein (.1) Potri.005G139300 [exp] 171 / 7e-51 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.004G007700 [exp] 156 / 4e-44 AT5G55090 321 / 2e-105 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.014G155000 [exp] 150 / 1e-42 AT1G05100 317 / 3e-107 mitogen-activated protein kinase kinase kinase 18 (.1) Potri.011G007400 [exp] 151 / 5e-42 AT5G55090 326 / 3e-107 mitogen-activated protein kinase kinase kinase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10034242 pacid=23175906 polypeptide=Lus10034242 locus=Lus10034242.g ID=Lus10034242.BGIv1.0 annot-version=v1.0 ATGGCGACTATGGGTTGGACACGAGGCAAGCGTCTGGGAAGCGGAGCATTCGGAGAGGTGTTCGTCGCCAAACCCAACAACCCGAATCTTCCGTTGATGG CTGTGAAGTCAGCGCCGGCGGACAAAGCCTCCTCCCTCCTCTTGGAGTTCGACATTCTGTCCAAGTTCCGAAACGTTCCGGGGATCATCCAGTGTATCGG AGAAGATGTCCCTTACGACCAATTACCAAGTGACGAGATGACTTACAATCTCTTTTTGGAGTACGCCGCCGGCGGGTCGCTCTCCGATATGATTGCGGAC TACAGAGGAAGCGGCAGCGGAGTTGGAATGCCGGAGAAGTTTGTCAAGATCAGCACTTTAGCACTATTGGAAGCGCTTTACTCCGTCCACTCAGCCGGAT ATACGCACTGCGATATCAAGCCGGACAACGTGCTTGTCTTTACGGATTCCGACAATGAGGGACTCTGCCATCTGAAGATCGCCGATTTCGGCCTGGCAAT GGAGACTCCGAATGATCCAGAGAGCGGGAATTTCAGGGGGACGGCGAGGTACTTGCCGCCGGAGGTCATCTTGTCCGGGAACGTGTCGCCGGCGATGGAC ATCTGGGCGTTAGGGTGTACGGTGGTGGAGATGCTGACGGGGAAGCTTCCGTTCTCAGAGTTGAAGGAGAATCCTCAAGTGATGTGGAGAATCGCCAACG GAGGTCAGCCGGAGATTCCTAACTGGCTGTCGGAAGAAGGCAAAGATTTCTTGAGCAAGTGTTTTGTGCAGAGTTCAAAGTTCCGATCGCCGGCGTGTAT GTTGCTCTCTCATCCTTTCGTAACCGGCCGGACTTCGGAGTTGCAGCAGAAGCAGGAATTGCATCAGATTTTTCAACAAGCCTTGACTGATCTGCAATGT TAG
AA sequence Show only first row Show all	>Lus10034242 pacid=23175906 polypeptide=Lus10034242 locus=Lus10034242.g ID=Lus10034242.BGIv1.0 annot-version=v1.0 MATMGWTRGKRLGSGAFGEVFVAKPNNPNLPLMAVKSAPADKASSLLLEFDILSKFRNVPGIIQCIGEDVPYDQLPSDEMTYNLFLEYAAGGSLSDMIAD YRGSGSGVGMPEKFVKISTLALLEALYSVHSAGYTHCDIKPDNVLVFTDSDNEGLCHLKIADFGLAMETPNDPESGNFRGTARYLPPEVILSGNVSPAMD IWALGCTVVEMLTGKLPFSELKENPQVMWRIANGGQPEIPNWLSEEGKDFLSKCFVQSSKFRSPACMLLSHPFVTGRTSELQQKQELHQIFQQALTDLQC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10034242 [exp]	0	1
AT1G13340			Regulator of Vps4 activity in ...		Lus10017592 [exp]	36.0	0.4992
					Lus10034553 [exp]	62.5	0.4897
AT5G01740			Nuclear transport factor 2 (NT...		Lus10001261 [exp]	72.8	0.5042
					Lus10029164 [exp]	83.4	0.4849
AT3G26010			Galactose oxidase/kelch repeat...		Lus10003692 [exp]	86.6	0.5101
AT3G44220			Late embryogenesis abundant (L...		Lus10034175 [exp]	89.8	0.4793
AT1G30920			F-box family protein (.1)		Lus10006734 [exp]	91.4	0.4756
					Lus10004437 [exp]	102.0	0.4664
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	102.6	0.4664
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	103.2	0.4664

Compare expression of checked genes

Lus10034242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.