Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40760 260 / 2e-83 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029020 [exp] 340 / 3e-115 AT2G40760 568 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G059400 [exp] 280 / 3e-91 AT2G40760 553 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.005G011300 [exp] 43 / 0.0003 AT1G09280 773 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034243 pacid=23176013 polypeptide=Lus10034243 locus=Lus10034243.g ID=Lus10034243.BGIv1.0 annot-version=v1.0 ATGTTCCCGCCGCCGCCGTCCCTGAACCCTAACCGTAATTCTTCCATTTCCCTTCTCCAATTGAACCCCATTTCACTCCCTCATTCCAATTCTCCTCACC GCCATCAACCCATCACTCCCTCCTTCAATTACACCTCCCAATCTCAAGCCATGACGATCTCAAACTGCAGCCTGGCCCCCATCTCTGCCGCACCGGAATC CGAGCACCCAACCTCACATTCCACTCTCACGGTCGTCTCCTTCTACCGCTTCGCCGATTTTCCTGACCACGCTGATCTGCGGAAGCCATTGAAGGACCTC TGCGAGGAACTGCGGGTTTCAGGGGGAATCATTCTAGCTCCAGAGGGAATCAACGGGAGTATATGTGGGACTAGGGATTCGGTTGAGAAAGTTCTTGCAT TTATTGAGAGTGATTCCCGGCTGATGAAGCTAAGGAAGATAGAGTCACCTGTCAGTCCAGAGGAGGAAGCTATCCATCACGGTCACTCAAGCAACTCTCC CCTCGCTGCAGGGGAAGACGCGCCATTTCGGTGGGATCATGTCAGGGTTAAGCTCAAGAAAGAGATTGTTACTCTTGGAATGCCAACTGTATCGCCGATT GAAAGGGTTGGGAAGTATGTGAAGCCTAGAGAATGGAACTCTTTGATTAGCGATCCAGATACAGTTTATCATTTGGAAGGAGGGATCTTGAAGTATCTCG AGGAGGTCCCGGAATCGGAGAGCCTATGGGAAGGTGAATGTTTTGTTTTCGACAAGCGAGTGTCTGTGGAGCATGGTTTGGCACAAGGGACGTGTAAGCT ATGTTACGGATGTAAGCAACCGGTGAGCGATGCTGACATGGAAGCGCCAGAATGGGAGTATGGGGTTTCTTGCCCTTACTGTTACTCGTCCAAATCGGAA GAAGAGAAAGAGAGAGCTCGAGCTCGACAAAAACAGTTCGAAGCTTGGGGCGTTATCGGAGGTCCAGATAAAGGTCGACGACCCAACAAGCTTTCTACTC AAATTTAA
AA sequence Show only first row Show all	>Lus10034243 pacid=23176013 polypeptide=Lus10034243 locus=Lus10034243.g ID=Lus10034243.BGIv1.0 annot-version=v1.0 MFPPPPSLNPNRNSSISLLQLNPISLPHSNSPHRHQPITPSFNYTSQSQAMTISNCSLAPISAAPESEHPTSHSTLTVVSFYRFADFPDHADLRKPLKDL CEELRVSGGIILAPEGINGSICGTRDSVEKVLAFIESDSRLMKLRKIESPVSPEEEAIHHGHSSNSPLAAGEDAPFRWDHVRVKLKKEIVTLGMPTVSPI ERVGKYVKPREWNSLISDPDTVYHLEGGILKYLEEVPESESLWEGECFVFDKRVSVEHGLAQGTCKLCYGCKQPVSDADMEAPEWEYGVSCPYCYSSKSE EEKERARARQKQFEAWGVIGGPDKGRRPNKLSTQI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40760			Rhodanese/Cell cycle control p...		Lus10034243 [exp]	0	1
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10042016 [exp]	5.7	0.8617
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10016416 [exp]	5.9	0.8759
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031566 [exp]	7.6	0.8844
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Lus10010101 [exp]	7.7	0.8774
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10012019 [exp]	9.2	0.8882
AT5G35400			Pseudouridine synthase family ...		Lus10022949 [exp]	10.2	0.8153
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10037760 [exp]	17.5	0.8491
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10016579 [exp]	18.3	0.8657
AT3G10140		RECA3	RECA homolog 3 (.1)		Lus10018037 [exp]	18.7	0.8654
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10008830 [exp]	18.8	0.8134

Compare expression of checked genes

Lus10034243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.