Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56400 139 / 2e-39 WRKY ATWRKY70, WRKY70 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) AT2G40750 122 / 1e-32 WRKY ATWRKY54, WRKY54 WRKY DNA-binding protein 54 (.1) AT5G01900 83 / 2e-18 WRKY ATWRKY62, WRKY62 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 62, WRKY DNA-binding protein 62 (.1) AT5G24110 83 / 4e-18 WRKY ATWRKY30, WRKY30 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) AT2G46400 82 / 5e-18 WRKY ATWRKY46, WRKY46 WRKY DNA-binding protein 46 (.1) AT4G23810 81 / 3e-17 WRKY ATWRKY53, WRKY53 WRKY family transcription factor (.1) AT4G11070 77 / 5e-16 WRKY ATWRKY41, WRKY41 WRKY family transcription factor (.1.2) AT1G66600 74 / 4e-15 WRKY ABO3, ATWRKY63, WRKY63 WRKY DNA-binding protein 63, ABA overly sensitive mutant 3 (.1) AT5G45260 75 / 1e-14 WRKY ATWRKY52, SLH1, RRS1 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G22570 72 / 2e-14 WRKY ATWRKY38, WRKY38 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY DNA-binding protein 38 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029021 [exp] 504 / 0 AT3G56400 149 / 3e-43 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10030517 [exp] 233 / 2e-75 AT3G56400 162 / 5e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10012870 [exp] 213 / 8e-68 AT3G56400 153 / 1e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10025216 [exp] 107 / 7e-27 AT3G56400 123 / 8e-33 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10014177 [exp] 102 / 2e-25 AT3G56400 105 / 3e-26 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10022736 [exp] 98 / 1e-23 AT5G01900 105 / 1e-26 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 62, WRKY DNA-binding protein 62 (.1) Lus10025133 [exp] 97 / 6e-23 AT3G56400 114 / 2e-29 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10001902 [exp] 82 / 2e-17 AT4G11070 210 / 6e-66 WRKY family transcription factor (.1.2) Lus10001062 [exp] 81 / 3e-17 AT4G11070 169 / 5e-50 WRKY family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G090300 [exp] 158 / 2e-46 AT3G56400 172 / 1e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.006G109100 [exp] 117 / 1e-30 AT3G56400 129 / 4e-35 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.016G137900 [exp] 113 / 5e-29 AT3G56400 127 / 2e-34 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.003G138600 [exp] 86 / 4e-19 AT4G11070 234 / 5e-75 WRKY family transcription factor (.1.2) Potri.012G031700 [exp] 86 / 6e-19 AT5G24110 196 / 4e-60 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) Potri.002G168700 [exp] 85 / 1e-18 AT2G46400 170 / 3e-50 WRKY DNA-binding protein 46 (.1) Potri.014G096200 [exp] 83 / 8e-18 AT4G23810 170 / 7e-50 WRKY family transcription factor (.1) Potri.001G092900 [exp] 82 / 8e-18 AT4G11070 238 / 8e-77 WRKY family transcription factor (.1.2) Potri.013G090400 [exp] 72 / 3e-14 AT2G40740 166 / 8e-49 WRKY DNA-binding protein 55 (.1.2) Potri.019G059300 [exp] 70 / 2e-13 AT2G40740 168 / 2e-49 WRKY DNA-binding protein 55 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10034244 pacid=23176004 polypeptide=Lus10034244 locus=Lus10034244.g ID=Lus10034244.BGIv1.0 annot-version=v1.0 ATGGGGAGTACTCCTTTTCTTCAGACTATGCAGAGGAAGCAGCAGCAGGAAGTGATCAAAGAGCTTGTTCAAGGCCAGCAATTTGCAGCTCAGCTTCAGC TTCTGCTCCAGAAGAACGATGTCCACCCCTCTGCAGATGAACTTGTTGTCAAGATCTTGACATCTTTCACTCATGCTATCTCTGCTCTTTCCGCCGATTC CGGCGACAATCAAGACGACTCCTCTGCTTCCGGCCTGTACGAGGATTCCGGCGAGAGCCCGAAACGGCGGCCGCCGCCGGCTGGAAAGGACAATAGAGGG TCTTACAAGAGAAGGAAGAGTGGACAGTGCAACATAATAATCTCACCCACGATACAAGATGGGCAAGCTTGGAAAAAGTATGGACAGAAGGAGATCCTTA ATGCCAAATTCCCTAGGAGCTACTTTCGATGCTCTAGGAAGTACGAGCAAGGGTGCAAGGCGACGAAGCACGTCCAGAAGCTTGAGCAGGAATCGACGGA GTTGTACTCCATCACTTATGTCGGACATCACACTTGCAGTGGGAACGTTCCGAGAGCAATTCCGTCAATATACCCGATTGCAACGGAGAACGAAACATCA GAGCTTTCCTTGGCCAAGAATGTCAAGGAGGAGAATTGCACGGTTGTGAAGAAAGATCATGACATCATGAACAATGAACAGAGTATGAGTGGTGTGACAA ATGACCACAATGCGAATATGTGGCAGGATTTGGTGCCACTTGAGCCAGAGGAGACCATTAATAACTATGATTATAATAGTTATTGTGGTTATAGTGATGG TGCTGGTTCTAACTTCCAAAATTTAGATATGGATTTTCTAATTAAGAATGTCGATTTTGAGAGCGATTTTAGATTTGATTGA
AA sequence Show only first row Show all	>Lus10034244 pacid=23176004 polypeptide=Lus10034244 locus=Lus10034244.g ID=Lus10034244.BGIv1.0 annot-version=v1.0 MGSTPFLQTMQRKQQQEVIKELVQGQQFAAQLQLLLQKNDVHPSADELVVKILTSFTHAISALSADSGDNQDDSSASGLYEDSGESPKRRPPPAGKDNRG SYKRRKSGQCNIIISPTIQDGQAWKKYGQKEILNAKFPRSYFRCSRKYEQGCKATKHVQKLEQESTELYSITYVGHHTCSGNVPRAIPSIYPIATENETS ELSLAKNVKEENCTVVKKDHDIMNNEQSMSGVTNDHNANMWQDLVPLEPEETINNYDYNSYCGYSDGAGSNFQNLDMDFLIKNVDFESDFRFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10034244 [exp]	0	1
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10029021 [exp]	1.4	0.9416
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10018547 [exp]	3.0	0.8913
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10022005 [exp]	3.2	0.9263
AT4G11170			Disease resistance protein (TI...		Lus10010222 [exp]	3.5	0.9036
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10025133 [exp]	3.7	0.8934
AT2G23140			RING/U-box superfamily protein...		Lus10011516 [exp]	4.8	0.8683
AT2G37240			Thioredoxin superfamily protei...		Lus10030582 [exp]	5.6	0.8607
AT3G24530			AAA-type ATPase family protein...		Lus10005293 [exp]	5.7	0.9048
AT5G17680			disease resistance protein (TI...		Lus10010221 [exp]	6.7	0.9002
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012870 [exp]	6.9	0.8922

Compare expression of checked genes

Lus10034244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.