Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40740 92 / 7e-22 WRKY ATWRKY55, WRKY55 WRKY DNA-binding protein 55 (.1.2) AT4G23810 63 / 3e-11 WRKY ATWRKY53, WRKY53 WRKY family transcription factor (.1) AT3G56400 58 / 1e-09 WRKY ATWRKY70, WRKY70 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) AT4G11070 57 / 3e-09 WRKY ATWRKY41, WRKY41 WRKY family transcription factor (.1.2) AT2G46400 56 / 7e-09 WRKY ATWRKY46, WRKY46 WRKY DNA-binding protein 46 (.1) AT2G40750 56 / 9e-09 WRKY ATWRKY54, WRKY54 WRKY DNA-binding protein 54 (.1) AT5G24110 54 / 2e-08 WRKY ATWRKY30, WRKY30 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) AT5G01900 54 / 3e-08 WRKY ATWRKY62, WRKY62 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 62, WRKY DNA-binding protein 62 (.1) AT5G22570 51 / 3e-07 WRKY ATWRKY38, WRKY38 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY DNA-binding protein 38 (.1) AT1G66560 50 / 5e-07 WRKY ATWRKY64, WRKY64 WRKY DNA-binding protein 64 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029022 [exp] 144 / 1e-41 AT2G40740 157 / 8e-47 WRKY DNA-binding protein 55 (.1.2) Lus10032372 [exp] 65 / 1e-11 AT4G11070 234 / 4e-75 WRKY family transcription factor (.1.2) Lus10023099 [exp] 63 / 3e-11 AT4G11070 235 / 3e-75 WRKY family transcription factor (.1.2) Lus10001062 [exp] 61 / 2e-10 AT4G11070 169 / 5e-50 WRKY family transcription factor (.1.2) Lus10001902 [exp] 61 / 2e-10 AT4G11070 210 / 6e-66 WRKY family transcription factor (.1.2) Lus10003894 [exp] 59 / 9e-10 AT4G11070 196 / 1e-60 WRKY family transcription factor (.1.2) Lus10039331 [exp] 58 / 2e-09 AT4G11070 174 / 1e-51 WRKY family transcription factor (.1.2) Lus10030517 [exp] 55 / 2e-08 AT3G56400 162 / 5e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10029021 [exp] 51 / 3e-07 AT3G56400 149 / 3e-43 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G090400 [exp] 94 / 1e-21 AT2G40740 166 / 8e-49 WRKY DNA-binding protein 55 (.1.2) Potri.019G059300 [exp] 69 / 4e-13 AT2G40740 168 / 2e-49 WRKY DNA-binding protein 55 (.1.2) Potri.003G138600 [exp] 65 / 6e-12 AT4G11070 234 / 5e-75 WRKY family transcription factor (.1.2) Potri.012G031700 [exp] 65 / 7e-12 AT5G24110 196 / 4e-60 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) Potri.002G168700 [exp] 64 / 2e-11 AT2G46400 170 / 3e-50 WRKY DNA-binding protein 46 (.1) Potri.001G092900 [exp] 61 / 2e-10 AT4G11070 238 / 8e-77 WRKY family transcription factor (.1.2) Potri.014G096200 [exp] 59 / 7e-10 AT4G23810 170 / 7e-50 WRKY family transcription factor (.1) Potri.013G090300 [exp] 57 / 4e-09 AT3G56400 172 / 1e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.016G137900 [exp] 55 / 1e-08 AT3G56400 127 / 2e-34 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.006G109100 [exp] 53 / 9e-08 AT3G56400 129 / 4e-35 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10034245 pacid=23176083 polypeptide=Lus10034245 locus=Lus10034245.g ID=Lus10034245.BGIv1.0 annot-version=v1.0 ATGGACCAAACACTTGCTCTGCTCTTGCACGGCTGCAACTTAGCCCGACACCTCGAATCCAACCTCCTCCCTCACATCAACAACTCCGAAGCGCTCTCAA AATCCTGCGACGAAATCATCGCCGTTTTCCTCGCTTGCAAAGAAAGACTCTCACTTTCCGATGACCCACAACAGGGCGGTTTGTTCGGACAGCCACCGTG GCTGATGAAGTGCAGAACCACCCCAACACCTGATCAGGTGGCTACTACTTCAACGGGAAAGGCGATGGAAGTTGCGGCGGTGGGACCCTCTTCATCGTCC GGAGGGGTGAGATTTGGCGGCGGCGGAGCGGTGGCGTCTTCATCGTCGACGGCCTCTCAACAAAGACCGAGAAGAAGAGGTTACTTCAGGTGCACCCATC AGAAGCTGTACAACTGCAGAGCTAAGAAGCAAGTCCAACGGCTAGACCACGACCCTGACACCTACGAAGTCACCTACAGAGGCCACCACACCTGCCACAT GTCTGCCACCGCACCCTCTGTCGGACCGCCAGAGGAACCCCACGCCGGCCCCTCCGCCACGTCAGCATTGCAGCAGGTCATAACCGCGGCTGCTCAGCAG CAGCAATCGACGGCCAGATGGGCGATGGAATTCCGTCTCGGCCGAGGAGTAGGAGTAGGAGGAGGAGGAGGGGGGAGAGATCAACATCATCATCAACAAC AAGTGGACTTTCCGGTGTCGGATATGGCGGCGGCGATGTTCAGCTCCGGGAGCAGCAGTACCAACGCTAGCATGGATCTGATCTTCAACGCCGCCATGGA TGCTCATGATCAGGACAAGCAATCGGATGATCGTGGGAAAGGGAAAGCATAA
AA sequence Show only first row Show all	>Lus10034245 pacid=23176083 polypeptide=Lus10034245 locus=Lus10034245.g ID=Lus10034245.BGIv1.0 annot-version=v1.0 MDQTLALLLHGCNLARHLESNLLPHINNSEALSKSCDEIIAVFLACKERLSLSDDPQQGGLFGQPPWLMKCRTTPTPDQVATTSTGKAMEVAAVGPSSSS GGVRFGGGGAVASSSSTASQQRPRRRGYFRCTHQKLYNCRAKKQVQRLDHDPDTYEVTYRGHHTCHMSATAPSVGPPEEPHAGPSATSALQQVITAAAQQ QQSTARWAMEFRLGRGVGVGGGGGGRDQHHHQQQVDFPVSDMAAAMFSSGSSSTNASMDLIFNAAMDAHDQDKQSDDRGKGKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Lus10034245 [exp]	0	1
					Lus10014739 [exp]	1.7	0.9647
AT2G24840	MADS	DIA, AGL61	DIANA, AGAMOUS-like 61 (.1)		Lus10030663 [exp]	3.5	0.9339
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10033955 [exp]	4.9	0.9364
AT1G78410			VQ motif-containing protein (....		Lus10023308 [exp]	7.3	0.9359
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10039454 [exp]	7.9	0.9086
AT4G16270			Peroxidase superfamily protein...		Lus10017069 [exp]	8.5	0.9166
AT2G27710			60S acidic ribosomal protein f...		Lus10019846 [exp]	10.6	0.8137
AT2G38870			Serine protease inhibitor, pot...		Lus10024870 [exp]	11.8	0.8906
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	15.0	0.8954
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10039234 [exp]	15.2	0.9295

Compare expression of checked genes

Lus10034245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.