Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36950 107 / 7e-28 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT3G50310 105 / 2e-27 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT5G67080 103 / 2e-26 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT5G27510 98 / 1e-24 Protein kinase superfamily protein (.1) AT5G55090 99 / 4e-24 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT3G46140 94 / 7e-23 Protein kinase superfamily protein (.1) AT3G45670 92 / 8e-22 Protein kinase superfamily protein (.1) AT4G26890 90 / 4e-21 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT2G41930 89 / 9e-21 Protein kinase superfamily protein (.1) AT2G42550 86 / 6e-20 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034242 [exp] 365 / 3e-129 AT3G50310 190 / 2e-58 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029023 [exp] 307 / 2e-107 AT3G50310 147 / 8e-43 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10026894 [exp] 271 / 3e-92 AT3G50310 187 / 1e-57 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034285 [exp] 206 / 2e-66 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1) Lus10034288 [exp] 200 / 5e-64 AT3G50310 181 / 5e-55 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029019 [exp] 184 / 6e-60 AT3G50310 96 / 3e-24 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10039141 [exp] 158 / 1e-47 AT3G46140 168 / 1e-49 Protein kinase superfamily protein (.1) Lus10017114 [exp] 150 / 9e-45 AT3G50310 127 / 3e-34 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034216 [exp] 119 / 4e-34 AT5G27510 107 / 2e-28 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G184200 [exp] 111 / 4e-29 AT4G36950 246 / 8e-79 mitogen-activated protein kinase kinase kinase 21 (.1) Potri.001G042400 [exp] 110 / 7e-29 AT3G50310 236 / 5e-75 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.007G044800 [exp] 102 / 4e-26 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139300 [exp] 100 / 3e-25 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139200 [exp] 96 / 1e-23 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.009G131100 [exp] 92 / 3e-22 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.006G181000 [exp] 90 / 2e-21 AT3G45670 213 / 4e-66 Protein kinase superfamily protein (.1) Potri.014G155000 [exp] 88 / 1e-20 AT1G05100 317 / 3e-107 mitogen-activated protein kinase kinase kinase 18 (.1) Potri.003G130000 [exp] 86 / 9e-20 AT5G55090 232 / 2e-72 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.002G228200 [exp] 84 / 4e-19 AT2G32510 321 / 2e-107 mitogen-activated protein kinase kinase kinase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10034246 pacid=23175951 polypeptide=Lus10034246 locus=Lus10034246.g ID=Lus10034246.BGIv1.0 annot-version=v1.0 ATGACTTACAATCTGTTTTTGGAGTACGCCGCCTGCGGGTCGCTCTCCGATATGATTGCGGACTACAGAGGAAGCGGCGGCGTAGTTGGAATGCCCGAGA AGTTTGTCAAGATCAGCACTTTAGCACTATTGGAAGCGCTTTACTCAGTCCACTCAGCCGGCTATACTCACTGTCACATCAAGCCGGATAACGTCCTTGT TTTTACGGATTCCGACGACGAGGGACTCTGGCATCCAAAGATTGTTGATTTTGCCCTGGCGATGGAGACTCCGAATGGTCCAGAGAACGGGAATTTCAGG GGGACGGCGAGGTACTTACCGCCGGAGGTTATCTTGTCCGGGAAGCGGCCGTTCTCAGAGTTGAAGGAGAATCCTCAAGTGATGTGGAGAATCGCCAACG GAGGTCAGCCGCAGATTCCTAATTGGCTGTCGGAAGAAGGCAAAGATTTCTTGAGCAAGTGTTTTGTGCAGAGCTCAAAGTTCCGATCGCCGGCTTGTAT GTTGCTCTCTCATCCTTTCGTATCCGGCCGGAGTTCGGAGTTGCAGCAGAAGCAGGAATTGCATCAGATTTTTGAACAAGCCTTGGCCGATCTGCAATAT TGTTAG
AA sequence Show only first row Show all	>Lus10034246 pacid=23175951 polypeptide=Lus10034246 locus=Lus10034246.g ID=Lus10034246.BGIv1.0 annot-version=v1.0 MTYNLFLEYAACGSLSDMIADYRGSGGVVGMPEKFVKISTLALLEALYSVHSAGYTHCHIKPDNVLVFTDSDDEGLWHPKIVDFALAMETPNGPENGNFR GTARYLPPEVILSGKRPFSELKENPQVMWRIANGGQPQIPNWLSEEGKDFLSKCFVQSSKFRSPACMLLSHPFVSGRSSELQQKQELHQIFEQALADLQY C

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Lus10034246 [exp]	0	1
					Lus10021453 [exp]	1.4	0.9757
					Lus10015310 [exp]	2.0	0.9657
AT5G05390		LAC12	laccase 12 (.1)		Lus10040957 [exp]	2.0	0.8946
AT5G19730			Pectin lyase-like superfamily ...		Lus10034981 [exp]	2.4	0.9437
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038525 [exp]	4.5	0.8884
AT5G25250			SPFH/Band 7/PHB domain-contain...		Lus10001944 [exp]	4.9	0.8648
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10034247 [exp]	5.3	0.8711
AT3G45070			P-loop containing nucleoside t...		Lus10003068 [exp]	6.9	0.8770
AT1G61420			S-locus lectin protein kinase ...		Lus10019600 [exp]	7.1	0.8430
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Lus10007395 [exp]	8.1	0.7855

Compare expression of checked genes

Lus10034246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.