Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38560 294 / 2e-98 RDO2, TFIIS REDUCED DORMANCY 2, transcript elongation factor IIS (.1) AT2G42730 100 / 1e-23 F-box family protein (.1.2) AT4G18720 96 / 7e-23 Transcription factor IIS protein (.1) AT5G42325 68 / 3e-13 Transcription factor IIS protein (.1) AT5G25520 56 / 2e-08 SPOC domain / Transcription elongation factor S-II protein (.1.2) AT2G25640 54 / 6e-08 SPOC domain / Transcription elongation factor S-II protein (.1) AT4G07950 44 / 2e-05 DNA-directed RNA polymerase, subunit M, archaeal (.1) AT5G05140 45 / 3e-05 Transcription elongation factor (TFIIS) family protein (.1) AT1G01210 43 / 3e-05 DNA-directed RNA polymerase, subunit M, archaeal (.1) AT3G10820 44 / 5e-05 Transcription elongation factor (TFIIS) family protein (.1), Transcription elongation factor (TFIIS) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025131 [exp] 293 / 5e-98 AT2G38560 387 / 6e-134 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10025215 [exp] 291 / 3e-97 AT2G38560 384 / 8e-133 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10022735 [exp] 286 / 1e-95 AT2G38560 375 / 2e-129 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10014178 [exp] 285 / 5e-95 AT2G38560 384 / 1e-132 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10029017 [exp] 224 / 3e-74 AT2G38560 70 / 1e-14 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10013146 [exp] 51 / 8e-07 AT5G11430 550 / 0.0 SPOC domain / Transcription elongation factor S-II protein (.1) Lus10008108 [exp] 51 / 8e-07 AT5G11430 559 / 0.0 SPOC domain / Transcription elongation factor S-II protein (.1) Lus10039000 [exp] 50 / 1e-06 AT5G05140 382 / 2e-129 Transcription elongation factor (TFIIS) family protein (.1) Lus10027295 [exp] 50 / 2e-06 AT5G05140 369 / 1e-124 Transcription elongation factor (TFIIS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G138100 [exp] 298 / 3e-100 AT2G38560 402 / 3e-140 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Potri.006G109300 [exp] 289 / 1e-96 AT2G38560 393 / 2e-136 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Potri.018G034500 [exp] 57 / 9e-09 AT5G25520 513 / 1e-164 SPOC domain / Transcription elongation factor S-II protein (.1.2) Potri.006G246800 [exp] 56 / 2e-08 AT5G25520 536 / 1e-173 SPOC domain / Transcription elongation factor S-II protein (.1.2) Potri.016G033300 [exp] 48 / 5e-06 AT5G05140 415 / 3e-142 Transcription elongation factor (TFIIS) family protein (.1) Potri.006G035500 [exp] 47 / 1e-05 AT5G05140 309 / 6e-101 Transcription elongation factor (TFIIS) family protein (.1) Potri.012G015900 [exp] 39 / 0.0004 AT4G07950 124 / 5e-38 DNA-directed RNA polymerase, subunit M, archaeal (.1) Potri.013G015000 [exp] 39 / 0.0005 AT3G25940 132 / 4e-41 TFIIB zinc-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07500 [flax] [poplar] TFIIS_M Transcription factor S-II (TFIIS), central domain CL0167 [flax] [poplar] Zn_Beta_Ribbon PF01096 [flax] [poplar] TFIIS_C Transcription factor S-II (TFIIS) CL0167 [flax] [poplar] PF08711 [flax] [poplar] Med26 TFIIS helical bundle-like domain
Representative CDS sequence Show only first row Show all	>Lus10034247 pacid=23176023 polypeptide=Lus10034247 locus=Lus10034247.g ID=Lus10034247.BGIv1.0 annot-version=v1.0 ATGGGAAGCTCGAAAGAGGATGAGAAGCAAATCCTGGAGCTGGTTCATGCAGCCAAGAAAGCAGCAGCAGAAGGAACAGGGGAGGAATCCAGATGCTTGG ATGCATTGTCTCGTCTCAAGGAATTTCCTGTCACCGTTCAATCCCTCGTCTCTACCCAGGTAGGGAAGCAGCTTCGGCCTCTGACGAAACATGCCTGCAA GGACATCCAGAAGCTAGCCTCCGACATCTTCCAAACATGGAAGTCCATGTTCCTCGAGCAATCCAACACCTCGAAAGTCGTGGCAAAACCTTCGAAAAAT ACTGACAAGCCTCGCATTTCGACACCACCACCAATCGAGCCACAAACTCCAGACAGGAAGCTCAAATCCCCTGCATTGAATCACTACTCCATGGTTGTAC CGAAATGCAACGATCCTACGAGAGACAAGATCCGGGAACAACTCTGCGAGGCCCTATCCAGGGTCTCGAGCGAAGACAACCGGGAGAATGGTCGTGACCC GGTTCGAGTTGCGGTCAAGGTCGAGTCGGTTATGTTTCAGGAGTGGGGGCCGTCCACGGGGGACCACAAGGCCAAGTACAGGTCAATCATGTTCAATATC AAGGACGGGAAGAACCCCGACTTCAGAAGGAAAGTTCTGCTTGGACAGTTTCTGCCCAAACAGATTGTCCAGTTGAGTTCAATGGACATGGCGAGCGACG AGAGGCAGCGGGAGAATGAGAAGATCGAGGCGAAAAAGCTGCTTGATTGCGAACTCGGTGGGGCCCCCAAGGCCACGACGGATCAGTTCAAGTGTAGTAG GTGTGGGCAGAGGAAGACTACTTACTATCAAATGCAGACTAGGAGTGCCGATGAGCCTATGACTACTTATGTCACTTGTGTCAACTGTAATAACCATTGG AAGTTTTGTTAG
AA sequence Show only first row Show all	>Lus10034247 pacid=23176023 polypeptide=Lus10034247 locus=Lus10034247.g ID=Lus10034247.BGIv1.0 annot-version=v1.0 MGSSKEDEKQILELVHAAKKAAAEGTGEESRCLDALSRLKEFPVTVQSLVSTQVGKQLRPLTKHACKDIQKLASDIFQTWKSMFLEQSNTSKVVAKPSKN TDKPRISTPPPIEPQTPDRKLKSPALNHYSMVVPKCNDPTRDKIREQLCEALSRVSSEDNRENGRDPVRVAVKVESVMFQEWGPSTGDHKAKYRSIMFNI KDGKNPDFRRKVLLGQFLPKQIVQLSSMDMASDERQRENEKIEAKKLLDCELGGAPKATTDQFKCSRCGQRKTTYYQMQTRSADEPMTTYVTCVNCNNHW KFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10034247 [exp]	0	1
AT5G19730			Pectin lyase-like superfamily ...		Lus10034981 [exp]	2.4	0.9153
					Lus10021453 [exp]	3.5	0.8955
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038525 [exp]	3.9	0.8751
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Lus10034246 [exp]	5.3	0.8711
AT5G60590			DHBP synthase RibB-like alpha/...		Lus10037409 [exp]	6.2	0.7159
					Lus10015310 [exp]	7.1	0.8678
AT5G05390		LAC12	laccase 12 (.1)		Lus10040957 [exp]	7.2	0.8207
AT1G03670			ankyrin repeat family protein ...		Lus10000916 [exp]	8.6	0.6376
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039501 [exp]	11.2	0.8529
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039502 [exp]	11.8	0.8449

Compare expression of checked genes

Lus10034247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.