Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05220 85 / 2e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029015 [exp] 241 / 6e-84 AT5G05220 77 / 1e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G090200 [exp] 99 / 2e-27 AT5G05220 75 / 2e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034248 pacid=23176041 polypeptide=Lus10034248 locus=Lus10034248.g ID=Lus10034248.BGIv1.0 annot-version=v1.0 ATGGGAACTTTTGCCTTAGTTTCTTACCCTGCAGCGCCATCTCCAACCATCAACACCTCTCTTCTTCCTTCAAGATCCAACCTTTATCCACCTGCAACTC AACCAATCCTCCCAACAAGAAGGAAATTTCATCTCAACTGTGCCAAGCTGAGCCCTACTCAGTCTCGCTACCCAGATCATGAGCAAGAATGGATGGATGT GGAATTTGGGAAACTGGTGAAGGAGAAATGCAGAGAGAGGAAAGGAGTGGTGGAGCTGTTGGAATGCCTTGAGACTGAAGCAATCATGGGAGATGATGAA GGTAAAGACCCTACTGATTATAATCGCAGAGCACAGATCTTTGACAGAAGCTCCAAAGTTTTCCAGTCTCTCAAGGAACAGCAAAACCAACAACCGTAA
AA sequence Show only first row Show all	>Lus10034248 pacid=23176041 polypeptide=Lus10034248 locus=Lus10034248.g ID=Lus10034248.BGIv1.0 annot-version=v1.0 MGTFALVSYPAAPSPTINTSLLPSRSNLYPPATQPILPTRRKFHLNCAKLSPTQSRYPDHEQEWMDVEFGKLVKEKCRERKGVVELLECLETEAIMGDDE GKDPTDYNRRAQIFDRSSKVFQSLKEQQNQQP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05220			unknown protein		Lus10034248 [exp]	0	1
					Lus10019580 [exp]	7.2	0.8129
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10039830 [exp]	12.0	0.8898
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Lus10028053 [exp]	12.3	0.8053
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10031234 [exp]	18.7	0.8108
AT1G29680			Protein of unknown function (D...		Lus10005415 [exp]	19.0	0.8626
					Lus10000456 [exp]	19.3	0.7595
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10031046 [exp]	30.5	0.8400
AT1G70890		MLP43	MLP-like protein 43 (.1)		Lus10012467 [exp]	33.8	0.8108
AT5G52790			CBS domain-containing protein ...		Lus10039288 [exp]	36.4	0.7878
AT2G40170		GEA6, ATEM6	LATE EMBRYOGENESIS ABUNDANT 6,...		Lus10030394 [exp]	38.8	0.7543

Compare expression of checked genes

Lus10034248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.