Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40780 169 / 3e-54 Nucleic acid-binding, OB-fold-like protein (.1.2) AT2G04520 47 / 4e-07 Nucleic acid-binding, OB-fold-like protein (.1) AT5G35680 47 / 6e-07 Nucleic acid-binding, OB-fold-like protein (.1.2.3) AT2G40910 46 / 4e-06 F-box and associated interaction domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029014 [exp] 290 / 1e-101 AT2G40780 199 / 4e-66 Nucleic acid-binding, OB-fold-like protein (.1.2) Lus10030510 [exp] 173 / 1e-55 AT2G40780 155 / 5e-49 Nucleic acid-binding, OB-fold-like protein (.1.2) Lus10002264 [exp] 44 / 6e-06 AT2G04520 248 / 6e-86 Nucleic acid-binding, OB-fold-like protein (.1) Lus10000920 [exp] 43 / 2e-05 AT2G04520 252 / 1e-87 Nucleic acid-binding, OB-fold-like protein (.1) Lus10033806 [exp] 43 / 2e-05 AT2G04520 254 / 1e-88 Nucleic acid-binding, OB-fold-like protein (.1) Lus10014627 [exp] 43 / 2e-05 AT2G04520 254 / 1e-88 Nucleic acid-binding, OB-fold-like protein (.1) Lus10012866 [exp] 0 / 1 AT2G40780 51 / 3e-15 Nucleic acid-binding, OB-fold-like protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061200 [exp] 208 / 2e-69 AT2G40780 187 / 2e-61 Nucleic acid-binding, OB-fold-like protein (.1.2) Potri.014G160900 [exp] 47 / 7e-07 AT2G04520 200 / 3e-67 Nucleic acid-binding, OB-fold-like protein (.1) Potri.002G219200 [exp] 44 / 5e-06 AT2G04520 198 / 2e-66 Nucleic acid-binding, OB-fold-like protein (.1) Potri.002G031700 [exp] 41 / 6e-05 AT2G04520 176 / 1e-57 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01176 [flax] [poplar] eIF-1a Translation initiation factor 1A / IF-1
Representative CDS sequence Show only first row Show all	>Lus10034249 pacid=23176115 polypeptide=Lus10034249 locus=Lus10034249.g ID=Lus10034249.BGIv1.0 annot-version=v1.0 ATGAAGGGAGGAAGGAAGAATCTGAAGAGGGCAGCGGGGGACGAACATAGCCTGAAACTTCAAGATGGCCAAAGCATGATGCAAGTTCTCTCCCTCCGAG GTTCCAACCTTATCGAGGTAATGGGCACAGATGGAGAGAAGTCATTGGCTTTGTTTCCGGCTAAGTTTCATAAGAGCATGTGGATAAAAAATGGGAGCTT TGTTATAGTCGACGAAAGTGGAAAGGAGAAGGCGATCGAGTCAGGCAGCAAGGTCACTTGTATTGTTTCTCAGGTTCTTTTCCATGAACAAGTCCGTAAG CTTCAGAAATCGCCCGAATGGCCAGAAATTTTCAAGTCTACAACTTTGGAAGATACCTCTCTACCGAAAGCCCCAAACCAAGAAGCAGACGAGCTCAATT CAAGTGATGATGAGGATGATGATGGGCTCCCACCATTAGTCGCCAACAAGAACAGGATCCGGCCACATGAAGTAGATTCCGAGTCAGATACAGGATCTGA TTCTGATTCTTGA
AA sequence Show only first row Show all	>Lus10034249 pacid=23176115 polypeptide=Lus10034249 locus=Lus10034249.g ID=Lus10034249.BGIv1.0 annot-version=v1.0 MKGGRKNLKRAAGDEHSLKLQDGQSMMQVLSLRGSNLIEVMGTDGEKSLALFPAKFHKSMWIKNGSFVIVDESGKEKAIESGSKVTCIVSQVLFHEQVRK LQKSPEWPEIFKSTTLEDTSLPKAPNQEADELNSSDDEDDDGLPPLVANKNRIRPHEVDSESDTGSDSDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10034249 [exp]	0	1
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10040809 [exp]	6.9	0.8207
AT3G59840			unknown protein		Lus10030936 [exp]	14.4	0.8182
AT1G75950		UIP1, SKP1A, AT...	UFO INTERACTING PROTEIN 1, ARA...		Lus10019794 [exp]	21.2	0.7827
AT5G62030			diphthamide synthesis DPH2 fam...		Lus10038750 [exp]	25.2	0.8104
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10016879 [exp]	25.4	0.7829
AT5G42060			DEK, chromatin associated prot...		Lus10032409 [exp]	25.9	0.7989
AT3G48610		NPC6	non-specific phospholipase C6 ...		Lus10035935 [exp]	28.3	0.7900
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007488 [exp]	29.7	0.7820
AT1G66080			unknown protein		Lus10031356 [exp]	39.5	0.7985
AT5G65490			unknown protein		Lus10002654 [exp]	41.1	0.7783

Compare expression of checked genes

Lus10034249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.