Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05190 67 / 1e-11 Protein of unknown function (DUF3133) (.1) AT2G46380 52 / 4e-07 Protein of unknown function (DUF3133) (.1) AT3G61670 50 / 3e-06 Protein of unknown function (DUF3133) (.1) AT3G56410 44 / 0.0002 Protein of unknown function (DUF3133) (.1), Protein of unknown function (DUF3133) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029013 [exp] 511 / 0 AT5G05190 64 / 6e-11 Protein of unknown function (DUF3133) (.1) Lus10030508 [exp] 142 / 1e-36 AT5G05190 114 / 4e-26 Protein of unknown function (DUF3133) (.1) Lus10012863 [exp] 125 / 5e-31 AT5G05190 110 / 9e-25 Protein of unknown function (DUF3133) (.1) Lus10003905 [exp] 61 / 9e-10 AT2G46380 271 / 8e-80 Protein of unknown function (DUF3133) (.1) Lus10005153 [exp] 52 / 1e-06 AT2G46380 503 / 3e-166 Protein of unknown function (DUF3133) (.1) Lus10003040 [exp] 47 / 3e-05 AT3G61670 484 / 1e-158 Protein of unknown function (DUF3133) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061400 [exp] 96 / 5e-21 AT5G05190 107 / 2e-23 Protein of unknown function (DUF3133) (.1) Potri.003G137700 [exp] 61 / 7e-10 AT3G61670 335 / 1e-101 Protein of unknown function (DUF3133) (.1) Potri.014G095700 [exp] 57 / 1e-08 AT3G61670 559 / 0.0 Protein of unknown function (DUF3133) (.1) Potri.001G093900 [exp] 51 / 1e-06 AT3G61670 370 / 2e-114 Protein of unknown function (DUF3133) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034250 pacid=23176058 polypeptide=Lus10034250 locus=Lus10034250.g ID=Lus10034250.BGIv1.0 annot-version=v1.0 ATGGGTGAAGTAGCAGCGAAGATGATCCGGCTGGTACGGTGTCCGAAATGCAGGCAGGTTCTCCACGAGCTCCCCAATGTTCCTGTTTATCAGTGCGGTG GCTGTGGGGCGTACCTCCAAGCGAAAATTCGGGCGCTTACCCCGTCAGCTTCAGAAGTGTCGGCTTCTTCTGTGGTTCATATTCCTAAGGTTGGTTCAAA TGATGATCCGAAATCTGAAGCTTCTGATCAAGAGCAGCAGCAAATTTCCAAGGTGGCTTCGTTGCCAGCGCATGCTACCTTTCTTGAGAAGGAAGAAATG TCTGCAGATGTTGGAGTTGCTTCACAAGCTGAATTCAATGATCTTGAAGTAGATGCGAGAAGATCTAGCACTTCGGGAGATGTTCATAGAAGCCAAGGAA GACTTGATCGTCCCTCTAGAGGCCGAGGAAGGTTGGAAAGGGATGAATTTCTTCCTCGGCCAAGGAGTTGCATGAATGGCTATGGAAGTGGCAGCCCCTC CTATCCATCGCAAAGGGGATCACACTTCCATGCACGAAATGACACTGCAGAGATTGAGCAGCAGAAGATCAGATTATTGAGAATGGTTCGAGAGTTGCGA GATCAACTCACCGCATCATGTTCGATGAATGATACAGTTAGTGCAAGAAGGGTTTCGGCTGGAGATGCTCGAAAACATCAACATGTTCCTAAATTTCGTG ATGGCGAGGCCCTGGAATATCCCAAATATCGCAGTGATCCCAGATCCCAGCAAATACAGCATTCGAGGATTCCCTTTTCTGCAGATGCAACATACTGCAG GCATAACATTCATCAGTGTTTCTGCTGCCAAACTCAATGCTGTAACCACAACAGAGTATTTTGCAGGGCACATTCTGGCGCGAACTTTTGCAGATCGTAC GGCTCTTGTTTTTGTGCAAGTCCTCGGATACATACAAACTCCAACTATTCCACATATGGCCGGACAACAAAGTTCAATGACCAAAGGCATCGAGGTGATT ATGATTCGAAGAATTACTCAAGGGAGACACATTACTCGGTTAATAAGAGGCATATTCGCCTTGCAGAAGCAGTAGACACCCATGAACTTTCCTACACTGT GGACAAACAAGGGACTGATGAAAGTTCAGAAATTGGGAAGGTACGGGAGAAAGGAAGGTCACCGCTTCATCGATTGATGGGTTACTCCACACTTAGTGGC GCCCTTCGTAGTACAGGCACAAACTAA
AA sequence Show only first row Show all	>Lus10034250 pacid=23176058 polypeptide=Lus10034250 locus=Lus10034250.g ID=Lus10034250.BGIv1.0 annot-version=v1.0 MGEVAAKMIRLVRCPKCRQVLHELPNVPVYQCGGCGAYLQAKIRALTPSASEVSASSVVHIPKVGSNDDPKSEASDQEQQQISKVASLPAHATFLEKEEM SADVGVASQAEFNDLEVDARRSSTSGDVHRSQGRLDRPSRGRGRLERDEFLPRPRSCMNGYGSGSPSYPSQRGSHFHARNDTAEIEQQKIRLLRMVRELR DQLTASCSMNDTVSARRVSAGDARKHQHVPKFRDGEALEYPKYRSDPRSQQIQHSRIPFSADATYCRHNIHQCFCCQTQCCNHNRVFCRAHSGANFCRSY GSCFCASPRIHTNSNYSTYGRTTKFNDQRHRGDYDSKNYSRETHYSVNKRHIRLAEAVDTHELSYTVDKQGTDESSEIGKVREKGRSPLHRLMGYSTLSG ALRSTGTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05190			Protein of unknown function (D...		Lus10034250 [exp]	0	1
AT3G54040			PAR1 protein (.1)		Lus10017196 [exp]	1.0	0.8701
AT4G12010			Disease resistance protein (TI...		Lus10015350 [exp]	1.4	0.8384
AT1G02810			Plant invertase/pectin methyle...		Lus10010309 [exp]	3.5	0.7999
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10018380 [exp]	7.7	0.7771
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018381 [exp]	10.8	0.7530
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10037226 [exp]	10.8	0.7872
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022415 [exp]	17.0	0.7294
AT1G69240		RHS9, ATMES15	ROOT HAIR SPECIFIC 9, ARABIDOP...		Lus10037068 [exp]	17.2	0.7561
AT5G03795			Exostosin family protein (.1)		Lus10039142 [exp]	17.3	0.6966
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10010804 [exp]	21.5	0.6967

Compare expression of checked genes

Lus10034250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.