Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05180 142 / 2e-37 unknown protein AT2G30500 72 / 3e-13 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT3G10880 69 / 1e-12 unknown protein AT5G58320 58 / 1e-08 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) AT1G64320 49 / 8e-06 myosin heavy chain-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029012 [exp] 726 / 0 AT5G05180 146 / 5e-39 unknown protein Lus10012861 [exp] 296 / 4e-96 AT5G05180 124 / 2e-31 unknown protein Lus10030507 [exp] 293 / 5e-95 AT5G05180 120 / 3e-30 unknown protein Lus10012862 [exp] 134 / 2e-36 ND 37 / 0.008 Lus10019111 [exp] 92 / 1e-19 AT5G58320 347 / 3e-113 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Lus10034448 [exp] 90 / 6e-19 AT5G58320 350 / 2e-114 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Lus10032360 [exp] 47 / 3e-05 AT1G64320 164 / 5e-44 myosin heavy chain-related (.1) Lus10033944 [exp] 47 / 3e-05 AT1G64320 169 / 6e-46 myosin heavy chain-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061600 [exp] 262 / 2e-81 AT5G58320 180 / 8e-50 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Potri.013G158100 [exp] 162 / 1e-43 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.019G131000 [exp] 142 / 2e-36 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.003G137300 [exp] 49 / 5e-06 AT1G64320 237 / 1e-69 myosin heavy chain-related (.1) Potri.001G094266 [exp] 44 / 4e-05 AT1G64320 65 / 1e-12 myosin heavy chain-related (.1) Potri.003G137400 [exp] 45 / 0.0002 AT5G41790 384 / 6e-109 COP1-interactive protein 1 (.1) Potri.001G094200 [exp] 44 / 0.0003 AT5G41790 407 / 9e-121 COP1-interactive protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034251 pacid=23175977 polypeptide=Lus10034251 locus=Lus10034251.g ID=Lus10034251.BGIv1.0 annot-version=v1.0 ATGGATCAGATTTCTACGAATATCCCGATTGCCAAAGAAGTAGATGTTGCTGCCTTTCCAGTGAAGGAAGAAGATATGAAGTATGAAGATACCATGCCTG ATTTGATTGCAGAGGCAGAAGAGGCTGATTCTTCTTCACCGGATTCTGATGCTAAGCTGGATGAGAATCTTCAAGTTGCATCTGCAAGTTCTGCTGCTGC TAATAGTACTGAACTGTCCGTAAAGGAAGGCTCTGAATCATCTCCTTCGCTATCAGACTCCGATTCGGAGTCTTCCAACTCTAGCAATGCCTACTACAGT CTCCCATTGAACACTGATCGAAGAGTACTATCATACCAGAATATCGCTGAAATTCCAAGGTTGGGAGACAAGATAGAGATGGTGGATGCAGCAGCTGAGG AAATAAAGAATCCGAGTTATGATGAACTGCTCAGGAAAGTAGAAATGTATGAAGATAATCTAAAGGTTTCGAATCTAAGACTGGAGAAGTCGGAGGAAGA GGTATCGTGGCTGAAGAACGAGCTCAGAAGAAATGCAGAAACTTTGCAGTCTGAATTGGATTCTGCTTATGGACTGATTAAAGTCCAGGAGGCTGATCTT GAAATGGAAAGGAGAAGAGTTCTGCAGCTAGAAACTGAAATTGGTGAAGGTACATGGGAGTTGCAGAATCAGGTTAAGTTGGCACAAGAAAAGATGGAAG CTTTGGAAGCTGAGTTCAGTTCTGAGAGGAAGCTGGTTAGAGAATTGGAGGAACTAAATTTGAGTTACGAAAACCAACTGTCTGACCGCGATGCTGAAGT GAAAGTGTTGGAAGTGAAACAAAACTTGTTGGAGACGAGTATTGCTGAGCTGGAATTGTTGCGGACTTCCTTGGAGGGCAAGCTAACGGAATCTGAAGCT GAGAAGATGGAAATGAAAGCTCTGCATGATGCTTGGGAGGTTCAGTCGCGAATAGAGATAAGTCAACTGAAGGAAGATCTGGAAGATAGAGGCGAACAAG TGGAGAGTTTGAACAGAAACTTTGACATTTTCAAACACAAACACGACATGGTTGAATCCGAGAAAGATGAGCTGAATGCCAAGATGGACACAATGAGAGC TGAGATGGCTCATCAACAGAACCAGTTGAATGAAATGTGTGAGCATCTACGACGGTTAAATCTCGAGAACGGAGACTTGAATGCCGACTCCGAAATTTTA AGGAAGCTGGCAGAGGAACTGAGATCAAGAGTGATCGAGCTGGAGAAGGAGGTGGAGCGGCAGAATGGTGAGATTGTAGCAGGAGGTGAAGAGAAAAGGG AGGCGATCCGACAGCTTTGTTTTGCGTTGGAGCATTACAGGAGTGGTTACAAGGAGCTTCGCCAAGCAATTGTCAGACACAAAAGGCTTCGCGTCCCAGC GTAG
AA sequence Show only first row Show all	>Lus10034251 pacid=23175977 polypeptide=Lus10034251 locus=Lus10034251.g ID=Lus10034251.BGIv1.0 annot-version=v1.0 MDQISTNIPIAKEVDVAAFPVKEEDMKYEDTMPDLIAEAEEADSSSPDSDAKLDENLQVASASSAAANSTELSVKEGSESSPSLSDSDSESSNSSNAYYS LPLNTDRRVLSYQNIAEIPRLGDKIEMVDAAAEEIKNPSYDELLRKVEMYEDNLKVSNLRLEKSEEEVSWLKNELRRNAETLQSELDSAYGLIKVQEADL EMERRRVLQLETEIGEGTWELQNQVKLAQEKMEALEAEFSSERKLVRELEELNLSYENQLSDRDAEVKVLEVKQNLLETSIAELELLRTSLEGKLTESEA EKMEMKALHDAWEVQSRIEISQLKEDLEDRGEQVESLNRNFDIFKHKHDMVESEKDELNAKMDTMRAEMAHQQNQLNEMCEHLRRLNLENGDLNADSEIL RKLAEELRSRVIELEKEVERQNGEIVAGGEEKREAIRQLCFALEHYRSGYKELRQAIVRHKRLRVPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05180			unknown protein		Lus10034251 [exp]	0	1
AT5G05180			unknown protein		Lus10029012 [exp]	1.0	0.9639
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10014407 [exp]	1.4	0.9384
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032622 [exp]	1.7	0.9379
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10017406 [exp]	2.0	0.9268
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10007702 [exp]	3.2	0.9250
AT4G35150			O-methyltransferase family pro...		Lus10006691 [exp]	4.0	0.9166
AT2G28780			unknown protein		Lus10024409 [exp]	4.9	0.9221
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Lus10003992 [exp]	5.3	0.9046
					Lus10005747 [exp]	5.5	0.9124
AT5G39020			Malectin/receptor-like protein...		Lus10025544 [exp]	6.0	0.9163

Compare expression of checked genes

Lus10034251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.