Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10870 99 / 8e-27 ATMES17, MES17 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) AT5G58310 87 / 4e-22 ATMES18 ARABIDOPSIS THALIANA METHYL ESTERASE 18, methyl esterase 18 (.1) AT2G23590 82 / 4e-20 ATMES8 methyl esterase 8 (.1) AT2G23600 81 / 9e-20 ATMES2, ACL, ATME8 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) AT4G16690 80 / 1e-19 ATMES16 ARABIDOPSIS THALIANA METHYL ESTERASE 16, methyl esterase 16 (.1) AT2G23560 80 / 2e-19 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT2G23610 79 / 2e-19 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) AT5G10300 77 / 1e-18 AtHNL, HNL, ATMES5 HYDROXYNITRILE LYASE, ARABIDOPSIS THALIANA METHYL ESTERASE 5, methyl esterase 5 (.1) AT2G23620 76 / 5e-18 ATMES1 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) AT4G37140 72 / 2e-17 ATMES20, MEE69 MATERNAL EFFECT EMBRYO ARREST 69, ARABIDOPSIS THALIANA METHYL ESTERASE 20, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034253 [exp] 194 / 7e-64 AT3G10870 288 / 1e-97 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Lus10029011 [exp] 192 / 7e-63 AT3G10870 293 / 1e-99 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Lus10023326 [exp] 83 / 2e-20 AT3G50440 263 / 3e-88 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10012854 [exp] 79 / 3e-20 AT2G23600 147 / 2e-45 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10019645 [exp] 78 / 6e-20 AT2G23600 139 / 7e-42 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10000840 [exp] 75 / 4e-19 AT2G23560 88 / 6e-23 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Lus10013193 [exp] 77 / 5e-18 AT3G29770 493 / 8e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10030707 [exp] 77 / 7e-18 AT3G29770 494 / 4e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10022467 [exp] 75 / 1e-17 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061700 [exp] 113 / 4e-32 AT3G10870 356 / 1e-124 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Potri.013G158200 [exp] 103 / 2e-28 AT3G10870 296 / 4e-101 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Potri.019G131100 [exp] 100 / 2e-27 AT3G10870 323 / 9e-112 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Potri.009G107500 [exp] 90 / 4e-23 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.009G107200 [exp] 89 / 8e-23 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.005G133700 [exp] 86 / 8e-22 AT2G23620 277 / 6e-94 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.011G082400 [exp] 86 / 9e-22 AT2G23590 254 / 4e-85 methyl esterase 8 (.1) Potri.007G037033 [exp] 85 / 1e-21 AT2G23620 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037200 [exp] 85 / 1e-21 AT2G23620 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037100 [exp] 85 / 2e-21 AT2G23620 235 / 1e-77 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034252 pacid=23175899 polypeptide=Lus10034252 locus=Lus10034252.g ID=Lus10034252.BGIv1.0 annot-version=v1.0 ATGGAAACCGGACAAGCTGGTTCAGGACTTTCATCGAACACCTGGTCTGCAAAATCCCCGCCTGCGCACTTCGTGCTGGTCCACGGCGTCGGCGGCGGTA GCTGGTGCTGGTACAGAATCCGGGCTCTGCTCGAGTCATCCGGCCACAAGGTCACGTGCGTCGACTTAGCCAGCGCCGGAATTGACCGGGTTGACCCGGA CACGCTGTTCGAATTCGAGGATTACAACCGGCCATTGATGGAGTTCATGGCGACGTTGCCGGAAACAGAGCAGGTTAAACATTGA
AA sequence Show only first row Show all	>Lus10034252 pacid=23175899 polypeptide=Lus10034252 locus=Lus10034252.g ID=Lus10034252.BGIv1.0 annot-version=v1.0 METGQAGSGLSSNTWSAKSPPAHFVLVHGVGGGSWCWYRIRALLESSGHKVTCVDLASAGIDRVDPDTLFEFEDYNRPLMEFMATLPETEQVKH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10034252 [exp]	0	1
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10034253 [exp]	1.0	0.8603
AT2G46150			Late embryogenesis abundant (L...		Lus10017531 [exp]	3.7	0.8268
AT3G58970		MRS2-4, MGT6	magnesium transporter 6 (.1)		Lus10001373 [exp]	3.9	0.7965
AT3G50910			unknown protein		Lus10041772 [exp]	4.5	0.7986
AT2G27950			Ring/U-Box superfamily protein...		Lus10016162 [exp]	6.9	0.7913
AT1G27190			Leucine-rich repeat protein ki...		Lus10013288 [exp]	9.6	0.8195
AT1G02820			Late embryogenesis abundant 3 ...		Lus10027986 [exp]	17.7	0.7906
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10028700 [exp]	21.4	0.7839
AT2G24940		ATMAPR2	membrane-associated progestero...		Lus10002241 [exp]	24.0	0.7596
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039621 [exp]	24.3	0.7870

Compare expression of checked genes

Lus10034252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.