Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10870 260 / 1e-86 ATMES17, MES17 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) AT4G16690 190 / 1e-59 ATMES16 ARABIDOPSIS THALIANA METHYL ESTERASE 16, methyl esterase 16 (.1) AT5G58310 188 / 7e-59 ATMES18 ARABIDOPSIS THALIANA METHYL ESTERASE 18, methyl esterase 18 (.1) AT1G33990 157 / 5e-46 ATMES14 methyl esterase 14 (.1) AT3G29770 151 / 5e-43 ATMES11 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) AT4G09900 149 / 8e-43 ATMES12 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) AT1G69240 150 / 3e-42 RHS9, ATMES15 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) AT1G26360 149 / 5e-42 ATMES13, SP1L1 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) AT2G23600 144 / 2e-41 ATMES2, ACL, ATME8 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) AT2G23620 138 / 2e-39 ATMES1 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029011 [exp] 508 / 0 AT3G10870 293 / 1e-99 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Lus10034252 [exp] 194 / 2e-63 AT3G10870 99 / 8e-27 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Lus10013193 [exp] 157 / 4e-45 AT3G29770 493 / 8e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10030707 [exp] 156 / 6e-45 AT3G29770 494 / 4e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10003511 [exp] 147 / 6e-42 AT4G09900 526 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10022467 [exp] 142 / 7e-41 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10005400 [exp] 137 / 7e-39 AT2G23610 206 / 8e-66 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Lus10005298 [exp] 139 / 1e-38 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10009489 [exp] 136 / 1e-38 AT4G09900 378 / 2e-132 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061700 [exp] 314 / 4e-108 AT3G10870 356 / 1e-124 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Potri.019G131100 [exp] 275 / 8e-93 AT3G10870 323 / 9e-112 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Potri.013G158200 [exp] 265 / 9e-89 AT3G10870 296 / 4e-101 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Potri.009G107200 [exp] 161 / 4e-48 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G036700 [exp] 160 / 8e-48 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.009G107500 [exp] 160 / 2e-47 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.019G077400 [exp] 158 / 3e-46 AT4G09900 547 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.017G096900 [exp] 156 / 5e-45 AT3G29770 463 / 2e-163 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.004G116500 [exp] 156 / 6e-45 AT3G29770 499 / 1e-177 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.013G104700 [exp] 154 / 2e-44 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10034253 pacid=23176133 polypeptide=Lus10034253 locus=Lus10034253.g ID=Lus10034253.BGIv1.0 annot-version=v1.0 ATGGAAACCGGACAAGCTGGTTCAGGACTTTCATCGAACACCTGGTCTGCAAAATCCCCGCCTGCGCACTTCGTGCTGGTCCACGGCGTCGGCGGCGGTA GCTGGTGCTGGTACAGAATCCGGGCTCTGATCAGGTCATCCGGCCACAAGGTCACGTGCGTCGACTTAGCCAGCGCCGGAATTGACCGGGTTGACCCGGA CACGCTGTTCGAATTCGAGGATTACAACCGGCCATTGATGGAGTTCATGGCGACGTTGCCGGAAACAGAGCAGGTAATACTGGTGGGACATAGCGCCGGT GGGTTGAGCTTGACGTCGGTGAGCCACAAGTTCCCAAAGAAGATTCGGGTGGCCGTCTACCTGGCCGCCACCATGCTCAAGCTTGGGTTCTGCACCCACC AAGACTTCCTCGATGGAGTCCCCGACCTATCGAGATTCGGCGACAAGGTATACGACCTCCGGTTCGAAAAGGGAACCGACCAACCTCCGACCTCCGCCGT CATTGCTAAGCCCTTCCTCCGTCAAGTTGCCTACAACACTAGCCCTCCAGAGGATGTCACCTTAGCCGTAATGCTCCTCAAGCCCGGCCCTGTCCAGGCC CTCCAATCAGCCCGATTCGACGGGCTATCAGCTTCATCGTCCGTGGATGGGGTCGAGAGGGTGTACGTAAAGACAATGCAGGACAACGTGGTCGGTGTGG AGCAGCAGGAGGCCATGATCCGGCGATGGCCTCCGTCTCGTGTCTTTTCACTGGATGCTGATCATAGCCCGTTCTTCTCGTCCCCTTTCCTGCTCTTCGG CCTCCTCCTCAACATCGCCGGTGACAATGGTTGTTAG
AA sequence Show only first row Show all	>Lus10034253 pacid=23176133 polypeptide=Lus10034253 locus=Lus10034253.g ID=Lus10034253.BGIv1.0 annot-version=v1.0 METGQAGSGLSSNTWSAKSPPAHFVLVHGVGGGSWCWYRIRALIRSSGHKVTCVDLASAGIDRVDPDTLFEFEDYNRPLMEFMATLPETEQVILVGHSAG GLSLTSVSHKFPKKIRVAVYLAATMLKLGFCTHQDFLDGVPDLSRFGDKVYDLRFEKGTDQPPTSAVIAKPFLRQVAYNTSPPEDVTLAVMLLKPGPVQA LQSARFDGLSASSSVDGVERVYVKTMQDNVVGVEQQEAMIRRWPPSRVFSLDADHSPFFSSPFLLFGLLLNIAGDNGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10034253 [exp]	0	1
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10034252 [exp]	1.0	0.8603
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Lus10040141 [exp]	3.7	0.8035
AT5G51040			unknown protein		Lus10043024 [exp]	4.9	0.8371
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017651 [exp]	5.5	0.8384
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10000230 [exp]	6.9	0.7970
AT1G58330		ZW2	transcription factor-related (...		Lus10027812 [exp]	7.4	0.8350
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038283 [exp]	8.0	0.8201
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10005201 [exp]	8.1	0.8051
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10012089 [exp]	9.4	0.8079
AT5G43490			unknown protein		Lus10003153 [exp]	9.5	0.8125

Compare expression of checked genes

Lus10034253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.