Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39160 246 / 6e-83 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 245 / 1e-82 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT3G05950 244 / 2e-82 RmlC-like cupins superfamily protein (.1) AT5G39130 243 / 6e-82 RmlC-like cupins superfamily protein (.1) AT5G39110 240 / 1e-80 RmlC-like cupins superfamily protein (.1) AT5G39150 236 / 3e-79 RmlC-like cupins superfamily protein (.1) AT5G39120 236 / 6e-79 RmlC-like cupins superfamily protein (.1) AT5G39180 235 / 1e-78 RmlC-like cupins superfamily protein (.1) AT4G14630 231 / 3e-77 GLP9 germin-like protein 9 (.1) AT5G38940 231 / 5e-77 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026962 [exp] 383 / 4e-137 AT3G05950 251 / 6e-85 RmlC-like cupins superfamily protein (.1) Lus10030048 [exp] 382 / 7e-137 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Lus10035279 [exp] 379 / 3e-135 AT5G39160 244 / 2e-82 RmlC-like cupins superfamily protein (.1.2.3) Lus10029010 [exp] 369 / 1e-131 AT3G05950 250 / 2e-84 RmlC-like cupins superfamily protein (.1) Lus10035278 [exp] 367 / 6e-131 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10032016 [exp] 339 / 9e-120 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10032015 [exp] 338 / 2e-119 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10035186 [exp] 333 / 1e-117 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Lus10035185 [exp] 333 / 2e-117 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163200 [exp] 311 / 1e-108 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 311 / 1e-108 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163800 [exp] 307 / 4e-107 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G163300 [exp] 303 / 1e-105 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163216 [exp] 303 / 1e-105 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G162200 [exp] 294 / 5e-102 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G465100 [exp] 288 / 1e-99 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.001G464100 [exp] 287 / 3e-99 AT5G39190 231 / 3e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464000 [exp] 287 / 3e-99 AT5G39190 231 / 4e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.013G052000 [exp] 268 / 2e-91 AT5G39110 282 / 5e-97 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10034254 pacid=23176068 polypeptide=Lus10034254 locus=Lus10034254.g ID=Lus10034254.BGIv1.0 annot-version=v1.0 ATGGCGAATCGACCTCTTATATCCGTCTTATTGCTAGCGGTAGCTCTCGCGTTGTGTTATCTCGCCTCTGCCGCCGACCCCTCTCCCCTCCAGGACTTTT GTGTGGCCGATTCGACTAACCAAGTGAGAATGAATGGATTTGCTTGCAAGAATCCTGCAACGGTCCAAGCAAGTGATTTCTCCTTCAGCGGGCTCCAAAA CCCAGGGAACACAGCCAATGCGGTGGGATCTGTTGTGACCCCGGTCACAGTGGCTCAGATCCCCGGTCTCAACACATTGGGAATCTCTATGGTGCGAATC GACTATGCTCCATGGGGAATTGGTTCTCCTCACACTCATCCACGGGCCACCGAGGTGCTGACTGTCATCGAGGGCAGTTTGGAAGTTGGGTTTGTCACGT CGAACCCGGAGAATCGTCTCATTTCCAAGATTCTTCAAAAGGGTGATGTGTTTGTCTTTCCGATAGGGTTGATTCACTTCCAGCGTAATGTTGGATATGG AAATGCAGTGGCTATTGCTTCCTTGAGCAGTCAAAATCCAGGAGTCATCACTATTGCAAACTCTGTATTTGGCTCGAAGCCTGATATTGCGACCGATATT CTTGCCAAGGCATTTCAGGTGGATAAGAGCATTGTTGAAAAGCTCCAATGGAATTTCTAA
AA sequence Show only first row Show all	>Lus10034254 pacid=23176068 polypeptide=Lus10034254 locus=Lus10034254.g ID=Lus10034254.BGIv1.0 annot-version=v1.0 MANRPLISVLLLAVALALCYLASAADPSPLQDFCVADSTNQVRMNGFACKNPATVQASDFSFSGLQNPGNTANAVGSVVTPVTVAQIPGLNTLGISMVRI DYAPWGIGSPHTHPRATEVLTVIEGSLEVGFVTSNPENRLISKILQKGDVFVFPIGLIHFQRNVGYGNAVAIASLSSQNPGVITIANSVFGSKPDIATDI LAKAFQVDKSIVEKLQWNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39160			RmlC-like cupins superfamily p...		Lus10034254 [exp]	0	1
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10024260 [exp]	1.0	1.0000
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10002831 [exp]	2.0	0.9997
AT3G08990			Yippee family putative zinc-bi...		Lus10004823 [exp]	3.5	0.9960
AT4G39830			Cupredoxin superfamily protein...		Lus10009603 [exp]	4.5	0.9928
					Lus10009892 [exp]	6.7	0.9801
AT5G36930			Disease resistance protein (TI...		Lus10030498 [exp]	7.9	0.9593
AT5G58850	MYB	ATMYB119	myb domain protein 119 (.1)		Lus10018220 [exp]	8.0	0.9602
AT3G25910			Protein of unknown function (D...		Lus10026800 [exp]	8.1	0.8678
AT1G13680			PLC-like phosphodiesterases su...		Lus10000649 [exp]	8.4	0.9651
AT2G23945			Eukaryotic aspartyl protease f...		Lus10031113 [exp]	8.8	0.9661

Compare expression of checked genes

Lus10034254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.