Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51160 108 / 3e-25 Ankyrin repeat family protein (.1) AT4G10720 103 / 1e-23 Ankyrin repeat family protein (.1.2) AT5G60070 94 / 3e-20 ankyrin repeat family protein (.1) AT1G34050 90 / 6e-19 Ankyrin repeat family protein (.1) AT5G54620 89 / 6e-19 Ankyrin repeat family protein (.1) AT3G13950 85 / 7e-19 unknown protein AT4G13266 86 / 9e-19 unknown protein AT3G09550 89 / 1e-18 Ankyrin repeat family protein (.1) AT5G15500 85 / 1e-17 Ankyrin repeat family protein (.1.2) AT3G12360 84 / 4e-17 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029008 [exp] 569 / 0 AT5G51160 121 / 8e-30 Ankyrin repeat family protein (.1) Lus10034256 [exp] 554 / 0 AT5G51160 140 / 2e-36 Ankyrin repeat family protein (.1) Lus10029007 [exp] 495 / 4e-172 AT5G51160 128 / 4e-32 Ankyrin repeat family protein (.1) Lus10029089 [exp] 394 / 5e-136 AT5G51160 104 / 4e-25 Ankyrin repeat family protein (.1) Lus10029006 [exp] 174 / 7e-50 AT5G51160 84 / 1e-17 Ankyrin repeat family protein (.1) Lus10029088 [exp] 167 / 1e-49 AT3G13950 62 / 5e-12 unknown protein Lus10041537 [exp] 138 / 9e-36 AT5G51160 350 / 2e-117 Ankyrin repeat family protein (.1) Lus10037894 [exp] 119 / 3e-28 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10024844 [exp] 99 / 1e-21 AT1G34050 353 / 4e-114 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G223800 [exp] 228 / 5e-69 AT5G51160 176 / 1e-49 Ankyrin repeat family protein (.1) Potri.006G223700 [exp] 208 / 3e-61 AT5G15500 145 / 3e-38 Ankyrin repeat family protein (.1.2) Potri.014G051100 [exp] 192 / 2e-55 AT5G51160 209 / 3e-62 Ankyrin repeat family protein (.1) Potri.012G113800 [exp] 151 / 2e-40 AT5G51160 351 / 1e-117 Ankyrin repeat family protein (.1) Potri.015G111300 [exp] 145 / 3e-38 AT5G51160 338 / 2e-112 Ankyrin repeat family protein (.1) Potri.018G050600 [exp] 132 / 4e-36 AT5G15500 91 / 1e-21 Ankyrin repeat family protein (.1.2) Potri.013G017254 [exp] 125 / 3e-31 AT5G51160 151 / 7e-41 Ankyrin repeat family protein (.1) Potri.018G042200 [exp] 127 / 4e-31 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.006G214500 [exp] 85 / 3e-17 AT3G12360 742 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 82 / 2e-16 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034255 pacid=23175979 polypeptide=Lus10034255 locus=Lus10034255.g ID=Lus10034255.BGIv1.0 annot-version=v1.0 ATGGCGGCGAATGATGCATCAGCTCTTTACGAAGCAGCAATGACAGGCAACACATCAACCCTCCAGAAATTAATCCAGAGAGACACTCTGATCCTCAGGA GGTCCACAGTGCTCACTTCCTTCAGCGAAACCCCCTTGCACATCTCGGTCCTGGCCGGCCACGTGGATTTCACCAGGGAGATTCTACATCAGGATCCTGA AATGGTGGCGGAAGTGGACTCTTCAAATTCGACGCCACTTCACTTGGCTGCTGCTGCTCGTGGAGATGCTGCAGAGATCGTAAGGATTCTGCTGAGTGTG GGAAAGGCAAAAGATGCTTGCTTTGTTCGGGACGGAGATGGCCGGATCCCTCTGCATCTGGCTGTGATTCGAGGCCGGGTTGGTATTGTCAGGGAGCTGG TTGTGGCGAGGCCGGATTCTGTGCTGGAGAAACTGGATGGTGATACTGTTTTGCACTTGTGTGTAAAGAACAATAATTTGGAGGCTTTGAAGTTGCTAGT GGAAATGATTGATTTGTCATCTATTATGTGGTTGGGGGATCAAGATGGGAACACCGTTTTGCATCTGGCTGTCATGTTCAAGCAGGTTCAGACGACAAGT TACCTAGCTTCACTGCCTAACATGGGGAAACCAGCAGCGAATTGCTTGAACGGACACGGCTCAACACCATTAGATTGCCTCGATCTGTCTCCCAAAGACT ACAAGAGCCTCCGAATTCAAAACATTCTCGTCCAGGCATCAGGCGGAGGCGGCGGTGTTGGAGCACAGGATGATGATGTTCATCAGCTGAAACCTTCTTC TAATCTTGTTCCATTTCCATCCAAAGAAGAAGCAGAAATTAGGAAGAAGACAGAAAAATGCTTCACACCAATGGCCAGAAAGTTCAAGTCTATCCTGGCA TACGACAAAAACTGGCTGAAAGACATGGAAGAAACAGTACTATTACTCGCCACCATCATAGCAGCCATGAGTTTCCAAGCTTCAACCAACCCACCAGGTG GTGTGTGGTCGGAGAACAGAACAAGCAGCACATTCGGCGCGGGTTGCAACCCGAATAACACTTGTAGGGCAGGAACTTCGGTGCTGGCTTACGGAACGGG AAACGTTCCAACTCAGCTCGATTTTTTCGTGGCGTTCAACACCGTTGCATTCGGTGCGTCTCTCGTGATCATGTTCCTGATCGTCGGCGGGTTCCCGATT CATAAGAACAAGTTTGTGATGTGGCTGCTGACGCAAGCTGTGTGCTGGGCGCTGACGTGTATGACGGTTGCGTTTTGGTTAGCTGGAAGGATGGTGATCC CGCGTGAGAGGCTCAATATTGCTGTTAGCGTATGGGGGTATTTGATTGGGGTTTGGATTGTGTTGATTCTGGCTACTAGTCTCCTCGACACGGCTCGGTT CTTGATCTGGCTTTTCGGCACTCCGAGCAAGGAGAATCTTGGACGAGAGTTAGAGTTGGTTTAG
AA sequence Show only first row Show all	>Lus10034255 pacid=23175979 polypeptide=Lus10034255 locus=Lus10034255.g ID=Lus10034255.BGIv1.0 annot-version=v1.0 MAANDASALYEAAMTGNTSTLQKLIQRDTLILRRSTVLTSFSETPLHISVLAGHVDFTREILHQDPEMVAEVDSSNSTPLHLAAAARGDAAEIVRILLSV GKAKDACFVRDGDGRIPLHLAVIRGRVGIVRELVVARPDSVLEKLDGDTVLHLCVKNNNLEALKLLVEMIDLSSIMWLGDQDGNTVLHLAVMFKQVQTTS YLASLPNMGKPAANCLNGHGSTPLDCLDLSPKDYKSLRIQNILVQASGGGGGVGAQDDDVHQLKPSSNLVPFPSKEEAEIRKKTEKCFTPMARKFKSILA YDKNWLKDMEETVLLLATIIAAMSFQASTNPPGGVWSENRTSSTFGAGCNPNNTCRAGTSVLAYGTGNVPTQLDFFVAFNTVAFGASLVIMFLIVGGFPI HKNKFVMWLLTQAVCWALTCMTVAFWLAGRMVIPRERLNIAVSVWGYLIGVWIVLILATSLLDTARFLIWLFGTPSKENLGRELELV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51160			Ankyrin repeat family protein ...		Lus10034255 [exp]	0	1
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10030779 [exp]	1.0	0.9046
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10012880 [exp]	7.7	0.8346
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031238 [exp]	11.4	0.8080
AT3G57240		BG3	"beta-1,3-glucanase 3", beta-1...		Lus10002807 [exp]	16.6	0.7716
					Lus10023495 [exp]	20.2	0.8795
AT2G47540			Pollen Ole e 1 allergen and ex...		Lus10008213 [exp]	30.1	0.7584
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10001775 [exp]	37.0	0.8194
					Lus10021499 [exp]	70.8	0.7727
					Lus10029807 [exp]	82.2	0.7912
AT4G37530			Peroxidase superfamily protein...		Lus10011079 [exp]	82.5	0.7980

Compare expression of checked genes

Lus10034255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.