Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51160 140 / 2e-36 Ankyrin repeat family protein (.1) AT4G10720 118 / 1e-28 Ankyrin repeat family protein (.1.2) AT5G15500 106 / 1e-24 Ankyrin repeat family protein (.1.2) AT5G60070 105 / 4e-24 ankyrin repeat family protein (.1) AT1G14480 104 / 5e-24 Ankyrin repeat family protein (.1.2) AT1G34050 103 / 2e-23 Ankyrin repeat family protein (.1) AT2G01680 100 / 2e-22 Ankyrin repeat family protein (.1) AT5G54620 100 / 2e-22 Ankyrin repeat family protein (.1) AT3G09550 100 / 5e-22 Ankyrin repeat family protein (.1) AT1G14500 98 / 7e-22 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029008 [exp] 599 / 0 AT5G51160 121 / 8e-30 Ankyrin repeat family protein (.1) Lus10034255 [exp] 556 / 0 AT5G51160 125 / 4e-31 Ankyrin repeat family protein (.1) Lus10029007 [exp] 504 / 3e-175 AT5G51160 128 / 4e-32 Ankyrin repeat family protein (.1) Lus10029089 [exp] 376 / 2e-128 AT5G51160 104 / 4e-25 Ankyrin repeat family protein (.1) Lus10029006 [exp] 299 / 1e-97 AT5G51160 84 / 1e-17 Ankyrin repeat family protein (.1) Lus10029088 [exp] 177 / 5e-53 AT3G13950 62 / 5e-12 unknown protein Lus10041537 [exp] 157 / 2e-42 AT5G51160 350 / 2e-117 Ankyrin repeat family protein (.1) Lus10037894 [exp] 143 / 2e-36 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10024844 [exp] 130 / 4e-32 AT1G34050 353 / 4e-114 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G223800 [exp] 249 / 7e-77 AT5G51160 176 / 1e-49 Ankyrin repeat family protein (.1) Potri.006G223700 [exp] 230 / 2e-69 AT5G15500 145 / 3e-38 Ankyrin repeat family protein (.1.2) Potri.014G051100 [exp] 223 / 7e-67 AT5G51160 209 / 3e-62 Ankyrin repeat family protein (.1) Potri.015G111300 [exp] 188 / 7e-54 AT5G51160 338 / 2e-112 Ankyrin repeat family protein (.1) Potri.012G113800 [exp] 171 / 8e-48 AT5G51160 351 / 1e-117 Ankyrin repeat family protein (.1) Potri.013G017254 [exp] 156 / 4e-42 AT5G51160 151 / 7e-41 Ankyrin repeat family protein (.1) Potri.018G042200 [exp] 157 / 2e-41 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.018G050600 [exp] 145 / 7e-41 AT5G15500 91 / 1e-21 Ankyrin repeat family protein (.1.2) Potri.001G187600 [exp] 112 / 3e-26 AT5G50140 280 / 3e-86 Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 99 / 6e-22 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034256 pacid=23175893 polypeptide=Lus10034256 locus=Lus10034256.g ID=Lus10034256.BGIv1.0 annot-version=v1.0 ATGGAGATACACCCTGCCCGGGCCGATGATGCATCAGCACTTTACGAAGCAGCAATGACAGGCGACACATCGACCCTCCACCGACTAACCTCTCGAGACA CCCTGATTCTCAAGAGATCAGCGCTCTCTTCCTTCAGCGAAACCCCCTTACACGTCTCGGTCCTGGCGGGCCACGTGGATTTCACCAGAGAGATTCTGCT TCAGGAACCTGAAATGGCCAGGGAAGTGGACTCTTCAAATTCCTCACCGCTTCACTTGGCTGCTGCCCCTGGACATACAGAGATCGTCAGGATTCTGCTG GGAGTGGGAACTGAATCTTGCTTGGTTCGCGATCAAGATGGTCGGATTCCTCTCCATCTGGCTGTGATTCGAGGCAGAGGTGGTATTGTTATGGAACTGG TCCGGGCTAGACCGGAATCTGTGTCGGAGAAACTGGATGGTGATACTGTTTTGCATCTGTGTGTAAAGTATAATCATTTGAAGGTGTTGAAGTTGCTGAT GGAAATGATTGATATGTCATCTATTATGTGGTTGGGGGATCGAGATGGGAACACAGTTTTGCATCTAGCTGTTGTGTTCAAGCAGGTTCAGACGACAAGT TACTTAGCTTCACTGGCTAACATGCGAGAATCAGCACTCAACTTCCTGAATAGACATGGCTCAACACCCTTAGATTGCCTTGAGTTTTATCCTAAAGACT ACAAGAGCCAGCAAATTCGAAACCTTCTACTCGAGGCAGGAACAGACATAATTCCTCGTCCTCAAGCGCAGGATCATCCCACACCTAATGCTAACCTTGT TCCAAGGCCAGAGTCCAAAAAACAGAGAAAAGCAAAAAGAAGAAACTGCTTCACATCAATTTGCAGAGAGTTCAAGTATTTCCTAGCGTACGACAGCAAC TGGCTGGACGAGATGAAAGAAACAGTTCTGTTAGTCGCCACCATCATAGCATCCATGAGCTTCCAAGCCGCGACCAACCCTCCCGGCGGCGTTTGGTCGG AGAACAAGACACTCTGCAGCAGCAATAACCCAACAAGCGTCTGTAAAGCCGGAACTTCGGTGCTGGCTTACGGAGACCGTCCGGATCTGCTCGATTTGTT CGTGGCGTTGAACACCGTCGCGTTCGGGGCGTCCTTGGGGATAATTCTGTTGATCGTCGGCGGGTTTCCGATCAAGAGGAACAAGTTTGTGACGTGGATA CTCACTCAAGCTGTGTGCATTGCTCTCACGTTTATGACGCTGGCATTTGTGGTTGCTGGGTTGCTGGTTATTCCGGTTCACCCGGTTTTGGTTAATGCGG TTGATTATCAGCGGGTGGTTATTCCGGGTCATACGATGCTGATTGTTGTTGCTCTGTGTTGGGGGCTTTTGCTTCTGGTTTGGCTTTTACTGATTGTGGT GCTTAATCTGCTCCACACGCTCCGGTTCGCGGTCTGGGTTTTCGGAAAGCTGAGTCGACTCGCAATCTGGGTTTACGAGAAGTTGCATAAGGTGTCAGGG TGTTGTTGCAGCAGCAACACGGGAGGGGAGCTGGTTTAG
AA sequence Show only first row Show all	>Lus10034256 pacid=23175893 polypeptide=Lus10034256 locus=Lus10034256.g ID=Lus10034256.BGIv1.0 annot-version=v1.0 MEIHPARADDASALYEAAMTGDTSTLHRLTSRDTLILKRSALSSFSETPLHVSVLAGHVDFTREILLQEPEMAREVDSSNSSPLHLAAAPGHTEIVRILL GVGTESCLVRDQDGRIPLHLAVIRGRGGIVMELVRARPESVSEKLDGDTVLHLCVKYNHLKVLKLLMEMIDMSSIMWLGDRDGNTVLHLAVVFKQVQTTS YLASLANMRESALNFLNRHGSTPLDCLEFYPKDYKSQQIRNLLLEAGTDIIPRPQAQDHPTPNANLVPRPESKKQRKAKRRNCFTSICREFKYFLAYDSN WLDEMKETVLLVATIIASMSFQAATNPPGGVWSENKTLCSSNNPTSVCKAGTSVLAYGDRPDLLDLFVALNTVAFGASLGIILLIVGGFPIKRNKFVTWI LTQAVCIALTFMTLAFVVAGLLVIPVHPVLVNAVDYQRVVIPGHTMLIVVALCWGLLLLVWLLLIVVLNLLHTLRFAVWVFGKLSRLAIWVYEKLHKVSG CCCSSNTGGELV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51160			Ankyrin repeat family protein ...		Lus10034256 [exp]	0	1
AT3G11010		AtRLP34	receptor like protein 34 (.1)		Lus10011039 [exp]	1.7	0.9592
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036697 [exp]	2.0	0.9629
AT3G47570			Leucine-rich repeat protein ki...		Lus10030845 [exp]	2.4	0.9554
AT3G57260		AtPR2, PR-2, PR...	PATHOGENESIS-RELATED PROTEIN 2...		Lus10027860 [exp]	2.6	0.9651
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018379 [exp]	4.0	0.9588
AT1G24140			Matrixin family protein (.1)		Lus10005605 [exp]	5.5	0.9572
AT5G10770			Eukaryotic aspartyl protease f...		Lus10020099 [exp]	6.7	0.9461
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024366 [exp]	7.5	0.9522
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Lus10014401 [exp]	7.7	0.8965
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10025200 [exp]	7.9	0.8955

Compare expression of checked genes

Lus10034256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.