Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58300 283 / 1e-90 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 273 / 3e-87 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 266 / 1e-84 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT4G23740 261 / 2e-82 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 257 / 1e-80 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 227 / 3e-69 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G64210 224 / 7e-69 Leucine-rich repeat protein kinase family protein (.1) AT2G36570 221 / 8e-67 Leucine-rich repeat protein kinase family protein (.1) AT5G41680 209 / 6e-66 Protein kinase superfamily protein (.1.2) AT5G53320 214 / 6e-65 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029005 [exp] 523 / 0 AT5G58300 612 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 310 / 2e-101 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 310 / 3e-101 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 294 / 7e-95 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 291 / 5e-94 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021383 [exp] 273 / 1e-86 AT3G08680 667 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10025210 [exp] 270 / 1e-85 AT3G08680 669 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 260 / 5e-82 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033936 [exp] 253 / 7e-80 AT4G23740 738 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G062100 [exp] 318 / 4e-104 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 303 / 9e-99 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 295 / 9e-96 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 289 / 3e-93 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 266 / 4e-84 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G023500 [exp] 254 / 1e-79 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 253 / 2e-79 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 251 / 8e-79 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G033200 [exp] 250 / 2e-78 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G035500 [exp] 233 / 9e-72 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10034257 pacid=23175962 polypeptide=Lus10034257 locus=Lus10034257.g ID=Lus10034257.BGIv1.0 annot-version=v1.0 ATGGTGGTCGGGAAGAAAGAGTTCGAGTTGCAGATGGAAGGGATCGGAAAGGGTGAGAGGCAGCATCCTAATGTTGTGCCGTTGAAGGCTTATTATCATT CGAAAGATGAGAAGCTTCTGGTTTATGATTTCTTCGCCGCCGGCAGCTTCTCCTCCCTCTTACATGGAAACAGGGGAGGTGAAGGAGGAAACAGAGCACC ACTAGGGTGGGAGCAGAGGATGAAGATAATCATCGGAGCAGCCAAAGGAATCGCCCACATTCACTCCTTACGCGACGGCGGATCAGCCAGTACTACCGCC GCCGGAAATCAGAAGTCGGTGCACGGGAACATAAAGGCAACGAACGTCCTCCTAACATCCGACTTCGACGGATGCATCTCCGACGTGGGACTAGCTCCTC TGATGAACTTCCCGGCCACCGCATCCCGAACAATCGGATACAGAGCTCCGGAGCTCAACGAGACCCGGAATCCAAGCCAGAAGTCCGACGTCTACAGCTT CGGAGTCCTTCTGCTGGAAGCTCTGACGGGGAAAGCTCCAATGAGATCATCAGGAGGAGGAGCGGCGGCGTGTGACGAGGTGGTGGATCTGCCCCGGTGG GTCAGGTCGGTGGTGAGGGAGGAGTGGACGGCGGAAGTGTTCGATTCGGAGCTGGTCACTGGCGGCCGGAATGTGGAGGAAGAAATGGTCCAGATGCTGC AGATTGCTCTGGCGTGCGTGGCGAGGGCCGCCGAGATGCGTCCGACGATGGATGAAGTCGTGAAGCTGATCGAGGAAACTGTCCGGCCGAACGGGTCGGA GAGCAGGAAGAGTGGGAATAGTAGCAATGCCACTGCCGCTGATGACCAGATGAGGTCGTCGTCGGAGGTTGATACACCGTCGTCTAATGTCCCCACTCCG CCACATGTATGA
AA sequence Show only first row Show all	>Lus10034257 pacid=23175962 polypeptide=Lus10034257 locus=Lus10034257.g ID=Lus10034257.BGIv1.0 annot-version=v1.0 MVVGKKEFELQMEGIGKGERQHPNVVPLKAYYHSKDEKLLVYDFFAAGSFSSLLHGNRGGEGGNRAPLGWEQRMKIIIGAAKGIAHIHSLRDGGSASTTA AGNQKSVHGNIKATNVLLTSDFDGCISDVGLAPLMNFPATASRTIGYRAPELNETRNPSQKSDVYSFGVLLLEALTGKAPMRSSGGGAAACDEVVDLPRW VRSVVREEWTAEVFDSELVTGGRNVEEEMVQMLQIALACVARAAEMRPTMDEVVKLIEETVRPNGSESRKSGNSSNATAADDQMRSSSEVDTPSSNVPTP PHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58300			Leucine-rich repeat protein ki...		Lus10034257 [exp]	0	1
AT1G11915			unknown protein		Lus10023362 [exp]	1.0	0.9473
AT5G58300			Leucine-rich repeat protein ki...		Lus10029005 [exp]	1.4	0.9410
AT5G58300			Leucine-rich repeat protein ki...		Lus10034258 [exp]	2.4	0.9396
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005559 [exp]	3.5	0.9209
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10013694 [exp]	3.7	0.9116
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10035783 [exp]	4.5	0.9182
AT1G74720		QKY	QUIRKY, C2 calcium/lipid-bindi...		Lus10033097 [exp]	4.9	0.9104
AT5G50290			unknown protein		Lus10001236 [exp]	4.9	0.9116
AT1G11915			unknown protein		Lus10038443 [exp]	6.9	0.8872
AT4G03415			Protein phosphatase 2C family ...		Lus10039802 [exp]	8.7	0.8625

Compare expression of checked genes

Lus10034257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.