Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58300 189 / 7e-57 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 177 / 2e-52 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 176 / 9e-52 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT4G23740 151 / 1e-42 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 142 / 3e-39 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 136 / 2e-37 Leucine-rich repeat protein kinase family protein (.1) AT3G02880 134 / 2e-36 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 129 / 1e-34 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT1G64210 125 / 1e-33 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 124 / 6e-33 RLK902 receptor-like kinase 902 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029005 [exp] 286 / 5e-93 AT5G58300 612 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 183 / 2e-54 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 182 / 3e-54 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10025210 [exp] 180 / 4e-53 AT3G08680 669 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 177 / 2e-52 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 176 / 1e-51 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021383 [exp] 174 / 5e-51 AT3G08680 667 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10014943 [exp] 146 / 7e-41 AT4G23740 634 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017756 [exp] 144 / 6e-40 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G062100 [exp] 208 / 1e-63 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 191 / 1e-57 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 190 / 3e-57 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 187 / 4e-56 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G095200 [exp] 159 / 9e-46 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 151 / 1e-42 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 150 / 3e-42 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G033200 [exp] 134 / 2e-36 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G023500 [exp] 131 / 2e-35 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G086100 [exp] 129 / 1e-34 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10034258 pacid=23175947 polypeptide=Lus10034258 locus=Lus10034258.g ID=Lus10034258.BGIv1.0 annot-version=v1.0 ATGAACTTCTCCCGCCACCACTCAGCTCACTCCGACTTAAACTCCGACGCCAAATCCCTCCTCACCTTCGCCTCCTTAGTCCCACACATAACCAGAAAGC TCAACTGGAACTCCTCCACACCAGTCTGCACCTCCTGGGTCGGAGTCACCTGCGACCCGACCCATGCCCGCGTCGTCGCCCTCCGACTCCCCGCCGCCGG ACTGTACGGTAACCTCCCCCCAAACACCATCGGAAACCTCCACTCCCTCAGAGTCCTCAGCTTAAGATCCAACGCACTCTCCGGTCCAATTCCTCTGGAC ATCCCTTCCATCCCAACCCTCAAATTCCTCTACCTCCAGCGCAACAACTTCTCCGGCGAAGTCCCCTCAACCGTTTCTCCGAAATTGACCGCTTTGGATC TGTCATTCAATTCGTTTTCCGGTCGGATCCCCTACTCGGTCCAAAACCTGACCCGACTCGCCGCCCTGTACCTCCAGAACAATTCGATCACTGGAGACTT GAAACCCTTGCAGCAGCTGCCGAATCTGAAGCTGCTGAATCTCAGCTTCAATTACCTCGCCGGCGAAATTCCGCCGCCGTTGCAGTACTAG
AA sequence Show only first row Show all	>Lus10034258 pacid=23175947 polypeptide=Lus10034258 locus=Lus10034258.g ID=Lus10034258.BGIv1.0 annot-version=v1.0 MNFSRHHSAHSDLNSDAKSLLTFASLVPHITRKLNWNSSTPVCTSWVGVTCDPTHARVVALRLPAAGLYGNLPPNTIGNLHSLRVLSLRSNALSGPIPLD IPSIPTLKFLYLQRNNFSGEVPSTVSPKLTALDLSFNSFSGRIPYSVQNLTRLAALYLQNNSITGDLKPLQQLPNLKLLNLSFNYLAGEIPPPLQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58300			Leucine-rich repeat protein ki...		Lus10034258 [exp]	0	1
AT1G11915			unknown protein		Lus10023362 [exp]	1.4	0.9443
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005559 [exp]	2.4	0.9394
AT5G58300			Leucine-rich repeat protein ki...		Lus10034257 [exp]	2.4	0.9396
AT3G25290			Auxin-responsive family protei...		Lus10021553 [exp]	8.0	0.8955
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10036242 [exp]	8.1	0.8898
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10013694 [exp]	8.5	0.8881
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002032 [exp]	9.8	0.8781
AT5G50290			unknown protein		Lus10001236 [exp]	9.9	0.8807
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10002213 [exp]	11.5	0.8654
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038382 [exp]	11.8	0.8709

Compare expression of checked genes

Lus10034258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.