Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10850 440 / 2e-158 GLY2, GLX2-2 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) AT2G31350 200 / 4e-63 GLX2-5 glyoxalase 2-5 (.1.2) AT1G06130 199 / 2e-62 GLX2-4 glyoxalase 2-4 (.1.2) AT2G43430 179 / 1e-54 GLY1, GLX2-1 GLYOXALASE II, glyoxalase 2-1 (.1.2) AT1G53580 90 / 4e-21 GLY3, GLX2-3, ETHE1 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029086 [exp] 534 / 0 AT3G10850 443 / 1e-159 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10029004 [exp] 486 / 2e-176 AT3G10850 397 / 1e-141 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10017706 [exp] 204 / 2e-64 AT1G06130 501 / 3e-180 glyoxalase 2-4 (.1.2) Lus10039860 [exp] 199 / 3e-62 AT1G06130 493 / 6e-177 glyoxalase 2-4 (.1.2) Lus10033662 [exp] 163 / 7e-49 AT2G43430 447 / 1e-159 GLYOXALASE II, glyoxalase 2-1 (.1.2) Lus10018625 [exp] 144 / 1e-41 AT2G31350 418 / 5e-148 glyoxalase 2-5 (.1.2) Lus10020760 [exp] 82 / 4e-18 AT1G53580 417 / 3e-148 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Lus10007336 [exp] 65 / 6e-12 AT1G53580 385 / 4e-135 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G062600 [exp] 468 / 3e-169 AT3G10850 415 / 1e-148 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Potri.017G026500 [exp] 197 / 1e-61 AT1G06130 515 / 0.0 glyoxalase 2-4 (.1.2) Potri.007G131300 [exp] 182 / 8e-56 AT1G06130 503 / 0.0 glyoxalase 2-4 (.1.2) Potri.005G204800 [exp] 92 / 9e-22 AT1G53580 395 / 3e-139 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Potri.001G380100 [exp] 83 / 1e-18 AT1G53580 407 / 2e-144 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [flax] [poplar] Metallo-HOrase PF00753 [flax] [poplar] Lactamase_B Metallo-beta-lactamase superfamily
Representative CDS sequence Show only first row Show all	>Lus10034259 pacid=23176028 polypeptide=Lus10034259 locus=Lus10034259.g ID=Lus10034259.BGIv1.0 annot-version=v1.0 ATGAAGATTTTCCACGTTCCTTGCTTGGAGGACAACTACGCCTACCTGATTATCGACGAAGCAACTAGAGAAGCTGCAGTGGTGGATCCTGTCGAGCCAG AGAAGCTGGTGAAGGCAGCTAATGAGCACGGTGTTCAGATCAAGCTAGTTCTCACCACTCATCATCATTGGGATCATGCTGGCGGGAATGAGAAATTGAA GCAGTTAATCCCCGAGATCAAAGTCTATGGAGGCTCTCTTGACAAAGTCAAGGCTTGTACTGACGCAGTTGATAATGGTGATAAGATATCTCTTGGTGCT GATGTTAATATACTTGCTCTCCATACTCCTTGCCACACAAAAGGACACATAAGCTACTATGTCACTGGCAAAGGGGGGGAAGACGGAGTTGTTTTCACCG GTGACACCCTGTTTATAGCTGGCTGTGGTAAGTTCTTCGAGGGAACGGCAGAGCAGATGCACCAATCACTGTGTGTAACATTGGCTTCGTTGCCAAAACC TACTCAAGTGTACTGTGGCCATGAGTACACGGTGAAGAATCTACAGTTTGCACAAACGGTTGAACCGGACAACGAAAAGATTCAACAGAAGCTAACATGG GCTCAGCAGCAAAGGCAAGCAGGATTACCTACTATTCCCTCAACCATTGAGGAAGAAATGGAGACTAACCCATTTATTCGAGCTGATCTTCCGGATCTCC AGTCGAAAGTTGGGTGTAAATCTGGAGTGGAAGCTCTGGGGAAGATAAGGGAGATGAAGGATAGCTGGAGAGGCTAA
AA sequence Show only first row Show all	>Lus10034259 pacid=23176028 polypeptide=Lus10034259 locus=Lus10034259.g ID=Lus10034259.BGIv1.0 annot-version=v1.0 MKIFHVPCLEDNYAYLIIDEATREAAVVDPVEPEKLVKAANEHGVQIKLVLTTHHHWDHAGGNEKLKQLIPEIKVYGGSLDKVKACTDAVDNGDKISLGA DVNILALHTPCHTKGHISYYVTGKGGEDGVVFTGDTLFIAGCGKFFEGTAEQMHQSLCVTLASLPKPTQVYCGHEYTVKNLQFAQTVEPDNEKIQQKLTW AQQQRQAGLPTIPSTIEEEMETNPFIRADLPDLQSKVGCKSGVEALGKIREMKDSWRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Lus10034259 [exp]	0	1
AT1G12390			Cornichon family protein (.1)		Lus10007000 [exp]	3.5	0.8576
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030906 [exp]	3.6	0.8814
AT1G12390			Cornichon family protein (.1)		Lus10006997 [exp]	5.0	0.8636
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10012211 [exp]	10.0	0.8736
AT3G11290			unknown protein		Lus10002039 [exp]	12.3	0.8705
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Lus10029086 [exp]	13.7	0.8529
AT2G35795			Chaperone DnaJ-domain superfam...		Lus10041420 [exp]	16.1	0.8404
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015744 [exp]	16.9	0.8146
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10035184 [exp]	18.3	0.8536
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10041539 [exp]	19.1	0.8287

Compare expression of checked genes

Lus10034259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.