Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13230 377 / 2e-128 Leucine-rich repeat (LRR) family protein (.1) AT1G68780 361 / 6e-122 RNI-like superfamily protein (.1) AT3G25670 360 / 4e-121 Leucine-rich repeat (LRR) family protein (.1) AT1G80080 146 / 6e-39 AtRLP17, TMM TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) AT2G42800 136 / 1e-35 AtRLP29 receptor like protein 29 (.1) AT4G28560 135 / 3e-35 RIC7 ROP-interactive CRIB motif-containing protein 7 (.1) AT4G20140 129 / 3e-32 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G35710 125 / 1e-30 Protein kinase family protein with leucine-rich repeat domain (.1) AT4G08850 120 / 6e-29 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT5G63930 118 / 2e-28 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034384 [exp] 594 / 0 AT1G13230 455 / 5e-159 Leucine-rich repeat (LRR) family protein (.1) Lus10038948 [exp] 376 / 8e-128 AT1G68780 404 / 2e-138 RNI-like superfamily protein (.1) Lus10027239 [exp] 369 / 4e-125 AT3G25670 402 / 6e-138 Leucine-rich repeat (LRR) family protein (.1) Lus10042458 [exp] 163 / 4e-46 AT1G80080 467 / 3e-163 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10026208 [exp] 150 / 2e-40 AT1G80080 500 / 2e-175 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10031383 [exp] 148 / 3e-39 AT2G42800 446 / 1e-152 receptor like protein 29 (.1) Lus10010946 [exp] 146 / 4e-39 AT2G42800 459 / 2e-159 receptor like protein 29 (.1) Lus10003624 [exp] 138 / 4e-36 AT4G28560 441 / 2e-152 ROP-interactive CRIB motif-containing protein 7 (.1) Lus10019525 [exp] 121 / 2e-29 AT3G47570 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G114700 [exp] 456 / 1e-158 AT1G68780 387 / 2e-131 RNI-like superfamily protein (.1) Potri.001G202100 [exp] 159 / 1e-43 AT1G80080 597 / 0.0 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Potri.002G008100 [exp] 135 / 4e-34 AT4G08850 565 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.008G211800 [exp] 129 / 4e-33 AT2G42800 474 / 7e-166 receptor like protein 29 (.1) Potri.002G008175 [exp] 130 / 2e-32 AT4G08850 566 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.005G227600 [exp] 126 / 8e-32 AT4G28560 444 / 2e-153 ROP-interactive CRIB motif-containing protein 7 (.1) Potri.002G008450 [exp] 124 / 1e-30 AT4G08850 462 / 9e-150 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.008G009300 [exp] 123 / 5e-30 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1) Potri.007G001000 [exp] 120 / 2e-29 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.002G008375 [exp] 120 / 4e-29 AT4G08850 557 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10034261 pacid=23175946 polypeptide=Lus10034261 locus=Lus10034261.g ID=Lus10034261.BGIv1.0 annot-version=v1.0 ATGAAGAGAGTGTTCACGATTACTCATTTCATTCTGGTGGTAAGCATATTACTGTATTTAAGTAGTTGGTGCAATGGAGAAGCAGCTTCAGACAGTAGTA GTAGTGATGGTGGAGGAGCTCCAATGGGGTCAGGGGAGAAAGCTGCGCTCTTTGCTGCCATACAAGGGTTTGTAGGTAGCTGGTGGAATGGTTCAGACCT TTATCCTGATCCTTGTGGCTGGACTCCCATCCAGGGTGTTTCCTGTGATATATTCAATGGACTTTGGTATGTAACTTCCTTAAGCATTGGACCTGTTCAC GACAACTCACTTGGCTGTGCCCCAAAAGTGGAGTTCACACCACAACTTTTCAAGCTCAAGCATTTGAAATCATTATCCTTCTTCCGCTGCTTCATAAGTA ATCATCCAGTTCCCAACGACTGGGAAACACTTGCAGCAAACTTGGAAGTCCTGGAGTTCCGATCGAATCCGGGCCTAATCGGTGAAATTCCCATGAGTTT CGGCAGCCTGGTCAACCTTAAATCTTTAGTGCTCCTCGAGAATGGGTTAACAGGTGCATTGCCAGCAAATGTTGGCAACTTAAAGAACCTGAGAAGACTT GTCTTAGCAGGTAACAAGTTCACTGGCAGGATACCTGAAAGTTTTGGCTTATTGACCAAGCTTCTAATCCTGGATTTAAGCAGAAACTCACTATCTGGCT CATTGCCTTCGACTTTTGGGAGTTTGACTTCACTACTGAAGCTTGATCTAAGCAACAACCGGCTCCAGGGTATCTTACCAATGGTGATTGGTAACCTGAA GAACTTGACACTTTTAGACCTGAGGAACAACAAATTCTCTGGAGGGTTGACCAAGTCATTTGAAGGAATGAGTTCCCTGGAAGATATGGCATTGTCTAAC AACCCACTCGGTGGAGACCTACTTGGCCTACAGTGGGGCAAGCTATTGAGCCTGGCGGTTCTGGACCTATCCAACGTGGGCTTGGCAGGCCAGATACCTA ACTCCATTGCAGAATTGAAGAGCCTGAGATATTTGGGTCTTGGCGACAACAACCTCACAGGAAATCTACCGCAGGAATTGGCCAGTTTGCCTTCTCTTAG CACACTCTACCTGTACGGGAATAACCTGACAGGACTTGTAGAATTTCCTGACGTGTTCATTGCGAAGCTCGGGAGGCGTTTTGGTGCTTGGAACAATCCA GAGTTGTGTTACCCTTTGGAGATCATGTCGTCAAGCAACATCCCTTATGGAGTAAAACGATGCTAG
AA sequence Show only first row Show all	>Lus10034261 pacid=23175946 polypeptide=Lus10034261 locus=Lus10034261.g ID=Lus10034261.BGIv1.0 annot-version=v1.0 MKRVFTITHFILVVSILLYLSSWCNGEAASDSSSSDGGGAPMGSGEKAALFAAIQGFVGSWWNGSDLYPDPCGWTPIQGVSCDIFNGLWYVTSLSIGPVH DNSLGCAPKVEFTPQLFKLKHLKSLSFFRCFISNHPVPNDWETLAANLEVLEFRSNPGLIGEIPMSFGSLVNLKSLVLLENGLTGALPANVGNLKNLRRL VLAGNKFTGRIPESFGLLTKLLILDLSRNSLSGSLPSTFGSLTSLLKLDLSNNRLQGILPMVIGNLKNLTLLDLRNNKFSGGLTKSFEGMSSLEDMALSN NPLGGDLLGLQWGKLLSLAVLDLSNVGLAGQIPNSIAELKSLRYLGLGDNNLTGNLPQELASLPSLSTLYLYGNNLTGLVEFPDVFIAKLGRRFGAWNNP ELCYPLEIMSSSNIPYGVKRC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034261 [exp]	0	1
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Lus10034679 [exp]	1.4	0.9571
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013335 [exp]	1.4	0.9575
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034384 [exp]	1.7	0.9563
AT3G02150	TCP	TFPD, PTF1, TCP...	TEOSINTE BRANCHED1, CYCLOIDEA ...		Lus10032984 [exp]	2.8	0.9472
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10022638 [exp]	3.2	0.9407
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10018359 [exp]	5.5	0.9352
AT1G53230	TCP	TCP3	TEOSINTE BRANCHED 1, cycloidea...		Lus10002195 [exp]	6.9	0.8570
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Lus10043080 [exp]	6.9	0.9029
AT3G50390			Transducin/WD40 repeat-like su...		Lus10011699 [exp]	7.0	0.9049
					Lus10002011 [exp]	9.5	0.8963

Compare expression of checked genes

Lus10034261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.