Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14790 383 / 6e-124 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 (.1) AT4G11130 211 / 5e-61 SMD1, RDR2 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) AT3G49500 180 / 5e-50 SDE1, SGS2, RDR6 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) AT2G19910 50 / 3e-06 RNA-dependent RNA polymerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019164 [exp] 520 / 2e-176 AT1G14790 1447 / 0.0 RNA-dependent RNA polymerase 1 (.1) Lus10042134 [exp] 238 / 2e-70 AT4G11130 1368 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10002361 [exp] 228 / 1e-69 AT4G11130 659 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10002910 [exp] 190 / 6e-54 AT3G49500 1203 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10002017 [exp] 189 / 3e-53 AT3G49500 1605 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10034390 [exp] 160 / 5e-49 AT1G14790 147 / 2e-42 RNA-dependent RNA polymerase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G136100 [exp] 419 / 2e-137 AT1G14790 1448 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.008G135800 [exp] 371 / 3e-120 AT1G14790 1205 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G105200 [exp] 362 / 5e-116 AT1G14790 1298 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G104900 [exp] 349 / 4e-111 AT1G14790 1276 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.015G073700 [exp] 228 / 1e-66 AT4G11130 1422 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Potri.018G028100 [exp] 202 / 1e-57 AT3G49500 1753 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.006G253500 [exp] 191 / 9e-54 AT3G49500 1739 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.006G164400 [exp] 45 / 8e-05 AT2G19930 861 / 0.0 RNA-dependent RNA polymerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05183 [flax] [poplar] RdRP RNA dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Lus10034262 pacid=23175923 polypeptide=Lus10034262 locus=Lus10034262.g ID=Lus10034262.BGIv1.0 annot-version=v1.0 ATGAAAGCTGTGGAGTTGATGCCTATGGGAGAGTTAACCAACGTTCTGATGGATATGCTAATCTGTGGATATAAACCTGGCGATGAGCCTTTTCTTTCAA TGATACTTAAGAATTTCCGGGATGCAAAGTTGCTCGATATACGGACGAAATCAAGGGTATTCCTTCAGAAAGCAAGATCTACGATTGGATGTCTGGATGA AAGAACTCTGGAGTATGGTCAGGTCTTCGTACAGTTTTCTGGCAATGGAAATGGAGTATATTGCAAAACTGATTTAGCAAGTCACTCAGTTCTCAACGGA AAGGTAGTAGTAGCTAAAAATCCATGCTTTCACCCAGCCGATATACGCGTGCTTAGGGCGGTTGATGTCCCAGCATTGCATCATATGGTGGATTGGTGTT GTTTTTCCACAAAAGGGCATGGGTACAAGTCTCTTGTCGATCGATCATTGGATTATACCCCTCCACCAACAGTCCAGCTAGATCATGATGTTACCATTCA GGAAGTGGAAGAATATTTCACCAATTACATAGTGAATGACAGTCTAGGAATAATTGCAAATGCTCACATCGGTTTTGCTGACAAGGAGCCTCCGAAAGCC ATGAGCAAACAATGCTTAGAGCTTGCGGAGAAGTTCTCTATAGCAGTCGATTTTCCGAAAACGGGAGTTCCAGCTGAGATACCTCCTGATCTCCACGTCA AAGAATACACAGATTTCATGGAAAAGCCTGACAAGCCAACATACCAATCCAACAATGCGATTGGGAAGCTTTTTCAATCAGTGAAAGACATTGCACCACA CACCGCCTGTGTCAAGTCCTTCACTAAGCAAGTGGATCGCCAGTGTTATGACCAAGACATGGAAGTTGATGGCTTCCAACATTACTTGGATGATGCCTAC TACTACAAAAGCAATTATGACTACAAGTTAGGAAACCTCATGGATCAAAACCGAGGCAGGAATGCTGAGTGGGAACATCATGAAACTATCTCGCTCTATT ACCAAGATAAGAGATTCAGAGGCAATACCGATGGCGGTAAGATCGTTGAAGAAAGAAGCAAGGTCATGGTTCAATGA
AA sequence Show only first row Show all	>Lus10034262 pacid=23175923 polypeptide=Lus10034262 locus=Lus10034262.g ID=Lus10034262.BGIv1.0 annot-version=v1.0 MKAVELMPMGELTNVLMDMLICGYKPGDEPFLSMILKNFRDAKLLDIRTKSRVFLQKARSTIGCLDERTLEYGQVFVQFSGNGNGVYCKTDLASHSVLNG KVVVAKNPCFHPADIRVLRAVDVPALHHMVDWCCFSTKGHGYKSLVDRSLDYTPPPTVQLDHDVTIQEVEEYFTNYIVNDSLGIIANAHIGFADKEPPKA MSKQCLELAEKFSIAVDFPKTGVPAEIPPDLHVKEYTDFMEKPDKPTYQSNNAIGKLFQSVKDIAPHTACVKSFTKQVDRQCYDQDMEVDGFQHYLDDAY YYKSNYDYKLGNLMDQNRGRNAEWEHHETISLYYQDKRFRGNTDGGKIVEERSKVMVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10034262 [exp]	0	1
AT2G41250			Haloacid dehalogenase-like hyd...		Lus10039005 [exp]	4.2	0.7469
AT1G75180			Erythronate-4-phosphate dehydr...		Lus10010803 [exp]	18.0	0.6403
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10043097 [exp]	20.2	0.6915
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10023096 [exp]	21.1	0.6735
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10032655 [exp]	32.0	0.6396
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10000484 [exp]	46.0	0.6184
AT2G41250			Haloacid dehalogenase-like hyd...		Lus10027299 [exp]	50.2	0.5824
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10036392 [exp]	53.0	0.6247
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10041290 [exp]	60.9	0.5839
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10020131 [exp]	61.3	0.5993

Compare expression of checked genes

Lus10034262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.