Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13220 523 / 6e-166 CRWN2, LINC2 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) AT1G68790 480 / 4e-150 CRWN3, LINC3 CROWDED NUCLEI 3, little nuclei3 (.1) AT1G67230 470 / 5e-146 CRWN1, LINC1 CROWDED NUCLEI 1, little nuclei1 (.1) AT5G65770 160 / 7e-40 CRWN4, LINC4 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) AT5G65780 148 / 6e-36 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034383 [exp] 1895 / 0 AT1G13220 680 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Lus10003075 [exp] 419 / 6e-127 AT1G67230 805 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10034076 [exp] 366 / 7e-108 AT1G67230 702 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10003074 [exp] 363 / 1e-107 AT1G67230 681 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10034075 [exp] 279 / 5e-78 AT1G67230 606 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10019257 [exp] 180 / 7e-46 AT5G65770 835 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) Lus10011568 [exp] 160 / 9e-40 AT5G65770 831 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G114800 [exp] 905 / 0 AT1G13220 567 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Potri.017G111400 [exp] 489 / 7e-153 AT1G67230 793 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Potri.012G034300 [exp] 208 / 9e-55 AT5G65770 844 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034263 pacid=23176019 polypeptide=Lus10034263 locus=Lus10034263.g ID=Lus10034263.BGIv1.0 annot-version=v1.0 ATGTTACCGCGGCAGAGACGTCCGTCGCCGGCAGTCACGCTGACTTCTCGGAGCGAGGCGCACAACGGCGTTGGTACATCCAATGCGGCTACGCCAAACC CTAGGAGTGTAGGGAAAGGAAAGGCCGTGGCTTTTGTCGACGGTCCCAGTCTCCCGCCACCTCATCCTCCGCCGACTGGGTTGCTGAGTGATAGTGATAT GGCAACTGAGGATGAAGATTTTGAAGCCTGGAGGCGGTTCAGGGAGGTGGGTTTGTTGGACGAGGCTGTTATGGAGAGAAAGGATCGTGAGGCACTTCTG GAGAAGGCTTCAGCACTTGAAAAAGAGCTTTTTGATTACCAGTATAACATGGGGATGCTCCTTATTGAAAAGAAAGAGTGGACAGCGAAACTTGAAGAAC TTAGGCAAGCAGTGGAAGAGGCACAAGAGATCCTCAAACGCGACCAATTGGCACACTTGATTTCGCTGTCAGAAATGGAGAGGCGTGAACAAAGTTTAAA GGAAGCTTTGAGGGTTGAGCAACAATGTGTGGCTGATCTTGAGAAGGCTTTACATCAATTGAAGGACGAGCATGTACAGGTCAAGCATGCTTCTGAGACA AAGTTGGCAGATGCTGAAGCTTTAGTTGCTGGTATTGAAGGGAAGTCTGTGGCCGTGAAGGAGAATATGCATACCGTTGAAGAGAAGCTATCAGAAGTAA ACCAAAAGAGTCTAGAACTGGATTTAAAACTGCAAGAAGTTGAAGCTCGTGAAATTTCAATTCAGAGAGAACGGCTCTCCTTGAATACAGACCGAGAAGC ACATGAGGCAGCTTTATTCAAGCAAAGAGAAGATTTACACGAGTGGGAGAGGCAACTGCAAGGAAAGGAAGAGAAGTTGGGTGATCTCCGAAGAGAACTC AACCAGAGAGAGGAAAAGGCAGGTGAAGGTGAGGCGAACCTGAAGCAGAAAGAGGTTGACGTGGAAGAAATGAAAAAGAAGATTGGTCTATCATTTGAAA AGTTGAAGGAGAGGGAAGTTGATGTTGACAATCAATTAGCAGATTTGGCTGTAAAAGAGAAGAGTGCTGAATCTCAGAGAAGTTCCCTGGAGAGGAAGGA GAAAGAGTTGCAGATGTGGGAAGATAAACTTACTGCTAGAGAACAAGTGGATATTCCAGATATTGTTGATGGGCACAAGGCCACTTTAGATGCTCAAGTG CAGGAGCTAGAGCTGGAATTGGAGCAGAGAAGGAAAAGTCTCGATGAGGAACTAAAAAGCAAGAAAGAAAAGGTGGAAAACCTTGAAGCTGAAATTCTCC ACAGGGAAGAAATGTTGGGAAAGAAAGAAGAAGCTCTAAACAAGAAAGCCGAGAGAGTGAAGGAGAGGGAGAAGAACCTTGATGCAAAGTTGAAAATGGT AAAGGAAAGAGAGAAAAGTTTGAAAGCAGAGCAGAGGAAGTTGGAGCTTGAGAAACGCCAATTACTTGCTGATAAAGAAAGCAACCAAAATCTCAAAGAT GAATTTGAGAGGATAAAAACTGAAATTTCTCAGCAGGAGCAGGTGATTGGTGAAACTAGCGAAGGCCTTAAAATAATCAATGAGGAAAGGTTAGAATTCA TCCGTCTGCGTGAAGAACTAAAGAGTGAGAGAGAGAAGTGTCGACATCAGGAAGAGTTTCTTATGAAAGAAGGGGAAGAAATGAATGTGGAAAGAGAGAG TTTTCGGAAGGAGTTGGAGCTGCTAGAAGGAAAGAGAACTCAGATTGAGAAAGAACAGAAAGAAATTGCTGAGGAGAGGGAGAGACTAGAAAAGATCCGT TATGTTGAAGAAGAAAGGCTTAAGAAAGAAGAAGACGCGATAAAGGAGCATGTCAACAGAGAACTGGAGACTCTAAGGGTTGAAAAAGAAGCATTTGAAG CCAGACTAAGGCATGAGCAGTCACTTTTATCTGAAAAACACCAAATGGAGCATGATCGTGTCGTACAAGAGTTGGAATTACAGAGAAGAAATTTGGATGT GTTGTTGATAAGTAAGGAGGAGGAAATGGAGAAATCCTTTCAGGAGAAGGAAAGCGCATTTCAGGAACTGAAGGATAAAGAACTTAAGAATATTGAACAC CTGAAAGAGACGGCCCAGAAAGAATTTGAAAAAATTCAGTCTGAAAAGCAGACATTGGAGAAAGAAAAAATAGAGATTCTCAAAGACAAGGAAGATTTTG GACGCCAACAGACAGGGGTGCTGAAAGACATTTCTGAACTTGAATCCCTTAGCAGGAAGCTCAGGGATCAAAGGGAACAGGTTATGAGAGAAAGGAATAA CTTCCTTGCATTTGCCGAGAAATGTAAGAATTGCAAGAACTGCAGAGACATCGCTGGAGCATTTGTGCTCTCTGATCTCCAGCCTCCTGAAATTGAGGTT GTCACGCTTCCTAGGTTAGGTGATGAAATTATTGGAAACCAAGGCCATATCAATGTGCCTGGTGCCTCCAGTGTCCAGAATAACCTGCAACAGGATGAGA TGGGACAAAGTAGTCCTCCGGGACCTACCTCTTGGCTCCGCAAATACAGCTCAAAGATTTTCTCTCCAACGAAAAGAATGGTCTCTCCTTCCAGCTTGGC GGGTGCGTCTACCTCTTCTGCCAGAAACGTCAATATCAGTGGACAAACAGAGAGATCTGTTATGGTTGTTGCAGAAGAAGCTAGGTTGGCTTCCATTCCT GACGATCAACCACAAGCATCCTTTGGTGTTGGTCACCAGCATCAAACTGAAGCTAGTAACCGTGATGGAGATGAGAGACTTTGTTTATCTGTTGATGATC ATAGTTACATCGACAGCAAGGTAGATGAATTTCCCGAAGATTCTGAGCAATCAGTATTGAAGAGCATGGAGCGCAGACGTGGGAGGAGACGTAAGACTGG TATAAATAGAACCCGTTCAGTGAAGACTGTGGTTGAGGAAGCAAGGAAGTTTCTCGGGGAAAGCCATGGGGAGCCAGAGCACAACTTGAATGAACAGCCT GAGGACATGTATGCACCAAGTGATGACAGTCGAGCTATTTCCAGTCGGGGAGGAAAGGCAGCTAGCAATGTTGCTAGGAAAAGGCAGCGGGCACCTTCAG AAAGCCAGCAGGATGTTTCTGATAGTGAAGGTGGATCTGTTAGTATAACTGCTGGTGGGCGCAGGAAGAGGCGGCAAACAGCCACCTCAATTACATCCAC ACCGGTCCAAACACGGTACAATCTTAGACGTCATAAGAATGCTGCGGTGAACTCAGCTGTACAAGCGTTGCCTGTCTTCGCGAAGAACCACCGGAAAGAA CCTAATGCTGGTGGAGCTACTTCTGTGGAACAACCATCAGTTGGAGCTGCGGATGAACCTCATAAGTCTACTAGCTTAATGCAGGTTACAACGCATAAAA ATGCTGAGGCGTCGGACTTGGAGAACAAGATGAAAGCTCCAGATGTTGATGAGCAAGTGGATGTAGCGAAGTCTGTCCAAATTGTAGAGTTGAGTGAGGA AGTAATTGGTACGACGGAATATATGAACGAGGAGGATGGCAGTACAATTCACGAGGAGGGTGATGAAGCTGAAGATGACAATGAGAATGAAGAATCTGAG CATCCTGGTCAAGCTTCTATAGGAAAAAAGATCTGGACCTTTTTCACTACTTGA
AA sequence Show only first row Show all	>Lus10034263 pacid=23176019 polypeptide=Lus10034263 locus=Lus10034263.g ID=Lus10034263.BGIv1.0 annot-version=v1.0 MLPRQRRPSPAVTLTSRSEAHNGVGTSNAATPNPRSVGKGKAVAFVDGPSLPPPHPPPTGLLSDSDMATEDEDFEAWRRFREVGLLDEAVMERKDREALL EKASALEKELFDYQYNMGMLLIEKKEWTAKLEELRQAVEEAQEILKRDQLAHLISLSEMERREQSLKEALRVEQQCVADLEKALHQLKDEHVQVKHASET KLADAEALVAGIEGKSVAVKENMHTVEEKLSEVNQKSLELDLKLQEVEAREISIQRERLSLNTDREAHEAALFKQREDLHEWERQLQGKEEKLGDLRREL NQREEKAGEGEANLKQKEVDVEEMKKKIGLSFEKLKEREVDVDNQLADLAVKEKSAESQRSSLERKEKELQMWEDKLTAREQVDIPDIVDGHKATLDAQV QELELELEQRRKSLDEELKSKKEKVENLEAEILHREEMLGKKEEALNKKAERVKEREKNLDAKLKMVKEREKSLKAEQRKLELEKRQLLADKESNQNLKD EFERIKTEISQQEQVIGETSEGLKIINEERLEFIRLREELKSEREKCRHQEEFLMKEGEEMNVERESFRKELELLEGKRTQIEKEQKEIAEERERLEKIR YVEEERLKKEEDAIKEHVNRELETLRVEKEAFEARLRHEQSLLSEKHQMEHDRVVQELELQRRNLDVLLISKEEEMEKSFQEKESAFQELKDKELKNIEH LKETAQKEFEKIQSEKQTLEKEKIEILKDKEDFGRQQTGVLKDISELESLSRKLRDQREQVMRERNNFLAFAEKCKNCKNCRDIAGAFVLSDLQPPEIEV VTLPRLGDEIIGNQGHINVPGASSVQNNLQQDEMGQSSPPGPTSWLRKYSSKIFSPTKRMVSPSSLAGASTSSARNVNISGQTERSVMVVAEEARLASIP DDQPQASFGVGHQHQTEASNRDGDERLCLSVDDHSYIDSKVDEFPEDSEQSVLKSMERRRGRRRKTGINRTRSVKTVVEEARKFLGESHGEPEHNLNEQP EDMYAPSDDSRAISSRGGKAASNVARKRQRAPSESQQDVSDSEGGSVSITAGGRRKRRQTATSITSTPVQTRYNLRRHKNAAVNSAVQALPVFAKNHRKE PNAGGATSVEQPSVGAADEPHKSTSLMQVTTHKNAEASDLENKMKAPDVDEQVDVAKSVQIVELSEEVIGTTEYMNEEDGSTIHEEGDEAEDDNENEESE HPGQASIGKKIWTFFTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Lus10034263 [exp]	0	1
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10032466 [exp]	2.2	0.7975
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10023516 [exp]	2.8	0.8248
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10008437 [exp]	5.8	0.7830
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Lus10040921 [exp]	6.0	0.8087
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003075 [exp]	6.5	0.8101
AT4G08350		GTA2, GTA02	global transcription factor gr...		Lus10018928 [exp]	9.5	0.7969
AT3G13670			Protein kinase family protein ...		Lus10042455 [exp]	11.5	0.7960
AT3G05670			RING/U-box protein (.1)		Lus10013501 [exp]	13.9	0.7598
AT5G44150			unknown protein		Lus10039868 [exp]	15.6	0.7322
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10024562 [exp]	16.0	0.8110

Compare expression of checked genes

Lus10034263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.