Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25690 623 / 0 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT4G18570 311 / 7e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G48280 266 / 3e-78 hydroxyproline-rich glycoprotein family protein (.1) AT1G07120 235 / 6e-69 unknown protein AT1G52080 167 / 2e-43 AR791 actin binding protein family (.1) AT4G04980 67 / 8e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034382 [exp] 1603 / 0 AT3G25690 1221 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10000986 [exp] 326 / 7e-100 AT4G18570 501 / 1e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015292 [exp] 323 / 4e-98 AT4G18570 568 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025419 [exp] 322 / 6e-98 AT4G18570 565 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031863 [exp] 233 / 1e-67 AT1G07120 393 / 2e-135 unknown protein Lus10038254 [exp] 151 / 8e-38 AT1G52080 333 / 2e-106 actin binding protein family (.1) Lus10025846 [exp] 150 / 2e-37 AT1G52080 337 / 4e-108 actin binding protein family (.1) Lus10031293 [exp] 139 / 6e-36 AT1G07120 267 / 3e-87 unknown protein Lus10011209 [exp] 79 / 1e-14 AT4G04980 336 / 2e-100 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G130800 [exp] 1107 / 0 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.001G460300 [exp] 338 / 5e-102 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.011G156500 [exp] 337 / 7e-102 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.004G054900 [exp] 318 / 1e-96 AT4G18570 420 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G064500 [exp] 300 / 6e-90 AT4G18570 432 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G003100 [exp] 279 / 5e-83 AT1G48280 356 / 2e-116 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G279000 [exp] 269 / 1e-80 AT1G07120 440 / 2e-153 unknown protein Potri.009G073600 [exp] 259 / 7e-77 AT1G07120 434 / 4e-151 unknown protein Potri.001G191300 [exp] 166 / 9e-43 AT1G52080 349 / 3e-112 actin binding protein family (.1) Potri.003G047200 [exp] 157 / 9e-40 AT1G52080 348 / 3e-112 actin binding protein family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034264 pacid=23175987 polypeptide=Lus10034264 locus=Lus10034264.g ID=Lus10034264.BGIv1.0 annot-version=v1.0 ATGATTGTCAGGGTAGGTCTCCTGGTTGCTGCTTCAATTGCAGCGTATGCAGTTAAGAAGAATAATGTCAAAAATCCAAATTCACCAGCTTTAGCAAAGG CTTCAGAAAATGGCGAACAAGGTCCCGAGAAGCATCAAAGCGAGGGGAAAGGCCAAGAGCAGATTGTATATTCTGATGGTAACCTCAAGGAGACTGATGG GAAGGAAGAAGAAGAAGAAGATAAAGAAGAGGTGAAACTGATCAATAGCATATCCAATGGTGCTCGTGATGCTCCTGCTGGGTTGGACGATGAAGACATC TTTCCTGAATTCGAGGATTTCTTATCAGGGGAAATTGAATATTCATTACCAAGTGACAAGTTTGATATGTCTGAGAGAAACAAGGTTTACGAAAGTGAGA TGGCAAACAATGCCAGTGAACTGGAACGTCTACGCAACTTGGTGATGGAATTGGAGGAAAGAGAAGTGAAGCTTGAAGGTGAATTGCTGGAGTACTATGG GCTGAAGGAGCAAGAATCAGATATTGTTGAATTGCAAAGGCAGCTCAAGATTAAGACAGTCGAGGTTGACATGTTGAATATAACCATCAATTCATTGCAG TCTGAGAAGAAGAGGCTTCAGGAGGAACTTGCACAAGGAGGAGGAGGTTCGGCCAGGAAAGAGTTGGAAGTGGCAAGGAACAAAATTAAAGAACTCCAGA GGCAGATACAGCTTGATGCTAACCAGACAAAGGGACAGCTGCTATTGCTCAAACAACAGGTTTCTGGTCTCTTGGCGAAAGAGGAAGAAGCTATCAGGAA AGATGTTGAGGTTGAAAGGAAGATGAAGATTGTGAAGGACTTGGAGATGGAGGTTGCAGAGCTGAAGAGGAAGAATAGAGAGCTTCAACATGAGAAGAGA CAGTTGACTGTTAAGCTGGATGCTGCTGAAGGAAAAATAACAGCTCTATCCAATATGACTGAGAATGAGCTGGTTGCTAATGCAAGAGAAGAGGTCAACA ATCTGAGGCATTCAAATGAAGACCTATTGAAGCAAGTGGAAGGACTTCAAATGAACAGGTTCAGCGAAGTAGAAGAGCTAGTGTATCTCCGTTGGGTTAA CGCATGCTTGAGATACGAGCTCCGGAATTACCAAGCACCTGCTGGGAAAATGTCAGCTCGTGAACTGAGCAAAAATCTCAGCCCCAAGTCACAGGAGAAG GCTAAACAGCTCATGTTAGATTATGCTGGATCGGAACGTGGAGGAGGACAAGGGGATACAGACATGGAGAGCAACTTTTCTCATCCATCTTCCCCCGGGA GTGAGGATTTCGACAATGTTTCTGTCGATAGTTCCTTCAGCAAATACAGCAGTCTCAGTAGGAAGCCTAGTTTAATGCAAAAGCTGAAGAAATGGGGGAA AAGCAAAGATGATTCAAGTGCCTTTTCATCACCAGCAAGGTCTCTAACAGGCTCTCCCAGCAGGTCAAGTATGAGCGTTAGACCGAGGGGTCCATTAGAA GCATTGATGCTAAGAAATGCTGGCGATAATATGGCTATCACAACTTTTGGCAAGATGGATCAGGATGCTCCTGACTCTCCTGAAACTCCAACTCTTCCAC CCATCAAAACACAAAACTCCGCAGTCGATTCGCTGAATAATGTTGCTTCCTCTTTCCAAGTGATGTCCAAGTCGGTTTCAGGAGTTCTAGACGAAAAATA CCCTGCCTATAAAGACCGGCATAAGTTGGCATTGGAGAGGGAGAAAAATATCAAGGAAAGAGCTGGACAAGCAAGAGCTGCCAAGTTTGGTAATAGTTCA AATTTGGAGTCAAGGGGAATGGGAGAAAACAGGCCTGCAAATTTGCCACCACAGCTAGCTCGACTGAAAGAGAGACCACTCGTTTCGACTGCTACCGCGA ATGACCAATCCACGGATGGAAAGTCTGGTGATTCTCCAGCAGCAGTGAGCAAGATTAAATTTGCTGACATTGAGAAGAGACCTCCTAGAGTGCCTAGACC ACCTCCTAAAGCATCAACTGCTGCTAATCCATCAAGTGGAGTTCCTGGTGCTCCTCCACCTCGTCCTCCAGGAGCTCCTCCACCACCACCACCACCTCCC ACCGGTGGTGGTCCTCCACCTCCACCGCCGCCTCCTGGAAGCTTGCCTAGAGGAGGAACTGGTGATAAAGTTCACAGGGCTCCTCAGTTGGTTGAATTCT ATCAGTCATTGATGAAACGGGAGGCAAAGAAGGACACGTCATTGTTGATTTCTTCGACAACCAATGCTTCAGATGCCAAGAGCAATATGATTGGGGAGAT TGAGAACAGATCAACATTCCTCTTAGCTGTGAAAGCAGATGTGGAGACTCAAGGTGATTTTGTGCAGTCCTTGGCAAGTGAAGTGAGGGCAGCCTCTTTC AGCAACATAAATGACTTGTTAGCCTTTGTGAATTGGCTAGACGAGGAACTCTCCTTCCTGGTGGACGAAAGGGCGGTTCTGAAGCACTTTGAATGGCCCG AAAGCAAGGCTGACGCATTGAGAGAGGCAGCTTTTGAGTACCATGACTTGATGAAGTTAGAAAAGCAAGTAACATCTTTTGGTGATGATCCCAGTCTCTC TTGTGATGCTGCTCTCAAAAAGATGTACAAACTACTGGAGAAGGTGGAGAATAGCGTATATGCACTTCTCCGCACAAGGGATATGGCGATTTCACGGTAC AGGGAGTTTGGGATTCCAGTTGACTGGCTTCAAGACGCAGGAGTAGTTGGCAAGATTAAACTCTCGTCTGTTCAGTTGGCAAGAAAGTATATGAAACGTG TATCGATGGAGCTTGATGCTCTGAGTGGACCTGAGAACGAACCTACCAGAGAGTTTATACTCTTGCAAGGAGTGCGCTTTGCGTTCCGTGTTCATCAGTT TGCTGGCGGGTTTGATGCCGAGAGCATGAAGGCATTTGAAGAATTGCGTACTCGGGTGCATTCCAAAGGGGAAGACGATGGCAATAATGTGGAAGTAGCA GAACAACAGTGA
AA sequence Show only first row Show all	>Lus10034264 pacid=23175987 polypeptide=Lus10034264 locus=Lus10034264.g ID=Lus10034264.BGIv1.0 annot-version=v1.0 MIVRVGLLVAASIAAYAVKKNNVKNPNSPALAKASENGEQGPEKHQSEGKGQEQIVYSDGNLKETDGKEEEEEDKEEVKLINSISNGARDAPAGLDDEDI FPEFEDFLSGEIEYSLPSDKFDMSERNKVYESEMANNASELERLRNLVMELEEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEVDMLNITINSLQ SEKKRLQEELAQGGGGSARKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLLAKEEEAIRKDVEVERKMKIVKDLEMEVAELKRKNRELQHEKR QLTVKLDAAEGKITALSNMTENELVANAREEVNNLRHSNEDLLKQVEGLQMNRFSEVEELVYLRWVNACLRYELRNYQAPAGKMSARELSKNLSPKSQEK AKQLMLDYAGSERGGGQGDTDMESNFSHPSSPGSEDFDNVSVDSSFSKYSSLSRKPSLMQKLKKWGKSKDDSSAFSSPARSLTGSPSRSSMSVRPRGPLE ALMLRNAGDNMAITTFGKMDQDAPDSPETPTLPPIKTQNSAVDSLNNVASSFQVMSKSVSGVLDEKYPAYKDRHKLALEREKNIKERAGQARAAKFGNSS NLESRGMGENRPANLPPQLARLKERPLVSTATANDQSTDGKSGDSPAAVSKIKFADIEKRPPRVPRPPPKASTAANPSSGVPGAPPPRPPGAPPPPPPPP TGGGPPPPPPPPGSLPRGGTGDKVHRAPQLVEFYQSLMKREAKKDTSLLISSTTNASDAKSNMIGEIENRSTFLLAVKADVETQGDFVQSLASEVRAASF SNINDLLAFVNWLDEELSFLVDERAVLKHFEWPESKADALREAAFEYHDLMKLEKQVTSFGDDPSLSCDAALKKMYKLLEKVENSVYALLRTRDMAISRY REFGIPVDWLQDAGVVGKIKLSSVQLARKYMKRVSMELDALSGPENEPTREFILLQGVRFAFRVHQFAGGFDAESMKAFEELRTRVHSKGEDDGNNVEVA EQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25690		AtCHUP1, CHUP1	Arabidopsis thaliana CHLOROPLA...		Lus10034264 [exp]	0	1
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10026572 [exp]	2.4	0.8427
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10002500 [exp]	7.5	0.8212
AT2G33580			Protein kinase superfamily pro...		Lus10041171 [exp]	7.6	0.8903
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Lus10033395 [exp]	9.5	0.8720
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Lus10034852 [exp]	11.0	0.8646
AT3G52050			5'-3' exonuclease family prote...		Lus10025723 [exp]	15.2	0.7925
AT5G43750		PnsB5, NDH18	Photosynthetic NDH subcomplex...		Lus10021890 [exp]	25.1	0.8631
AT1G74875			unknown protein		Lus10023768 [exp]	25.5	0.8077
AT1G75100		JAC1	J-domain protein required for ...		Lus10018811 [exp]	26.2	0.8142
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10041878 [exp]	26.5	0.8301

Compare expression of checked genes

Lus10034264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.