Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26090 233 / 1e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034381 [exp] 410 / 2e-144 AT1G26090 509 / 4e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G130700 [exp] 260 / 2e-85 AT1G26090 460 / 3e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G115401 [exp] 154 / 1e-47 AT1G26090 145 / 1e-41 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034265 pacid=23176135 polypeptide=Lus10034265 locus=Lus10034265.g ID=Lus10034265.BGIv1.0 annot-version=v1.0 ATGGCTGAGAAGACTGACCTTGGGAGATTGGCTACTCCTTCAGTGTTGAGACTGCTTGATGAAGCGCTGGATTTAACCGATAGGAGATCCTTCTTGAACG GACCAAGGGGTTCGAAGGGAGCTTCTGTGTTTGCTGATCCTAATAGGTTTGGTTGCTTCATAGTGATGGATCCTAACAATCCAGTCTCTGTGAACTCTCC ATTACGTTACTGGGGTTGCGCTATCCAGGCTGGTACAAAGGTTTCTGGTGCCATTGGGTCAACAACTTCTTCCCTAAGCATGAGTGATGAACTCAGGCAA AAGTTTTCCCCTTTACCTTACGCTTGCCTTCCTGATTTGTCAATGCATGATCCTTCGAGTTGGGATGAAATCCTGGAAAACTCACTCAACCAAGATGGAA GGGCTTTGTTTTCTCCATCAGCAAGTGGTGTCAGTAGCATAACATCACCGGTGGAATTCAATACAATTAAAAAGTCAGTAACACTCTTCATGCCGGGTTT TGACAAGTCAGAGATTAAGCTATACCAATATAGAGGACGATGTGAGTTGCTGGTGGAAGCAGGGGATCAGAGGCGTGTGATTGTTCTACCACCAAAAATT CAAGGGAAAGTGGGAGGTGCAAAGTTCATCGAGAGAAGTCTAGTGATCACAATGCGATAA
AA sequence Show only first row Show all	>Lus10034265 pacid=23176135 polypeptide=Lus10034265 locus=Lus10034265.g ID=Lus10034265.BGIv1.0 annot-version=v1.0 MAEKTDLGRLATPSVLRLLDEALDLTDRRSFLNGPRGSKGASVFADPNRFGCFIVMDPNNPVSVNSPLRYWGCAIQAGTKVSGAIGSTTSSLSMSDELRQ KFSPLPYACLPDLSMHDPSSWDEILENSLNQDGRALFSPSASGVSSITSPVEFNTIKKSVTLFMPGFDKSEIKLYQYRGRCELLVEAGDQRRVIVLPPKI QGKVGGAKFIERSLVITMR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26090			P-loop containing nucleoside t...		Lus10034265 [exp]	0	1
AT1G56050			GTP-binding protein-related (....		Lus10031209 [exp]	5.3	0.8936
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003674 [exp]	5.7	0.9059
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10020325 [exp]	8.9	0.9086
AT1G14030			Rubisco methyltransferase fami...		Lus10036780 [exp]	12.4	0.9027
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10041094 [exp]	13.4	0.9072
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039687 [exp]	15.3	0.8857
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10021972 [exp]	15.7	0.9057
AT4G11130		SMD1, RDR2	SILENCING MOVEMENT DEFICIENT 1...		Lus10002361 [exp]	18.2	0.8905
					Lus10038585 [exp]	19.0	0.8996
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Lus10038523 [exp]	19.1	0.8852

Compare expression of checked genes

Lus10034265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.