Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71740 50 / 2e-08 unknown protein AT3G14760 47 / 1e-06 unknown protein AT1G49000 46 / 1e-06 unknown protein AT3G18560 44 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041497 [exp] 226 / 4e-76 AT1G71740 51 / 2e-08 unknown protein Lus10032453 [exp] 58 / 3e-10 AT1G49000 70 / 1e-14 unknown protein Lus10042953 [exp] 57 / 8e-10 AT1G49000 67 / 8e-14 unknown protein Lus10042773 [exp] 50 / 6e-08 AT1G71740 81 / 8e-21 unknown protein Lus10029742 [exp] 49 / 8e-08 AT1G71740 82 / 5e-21 unknown protein Lus10038145 [exp] 47 / 3e-06 AT3G14760 70 / 1e-14 unknown protein Lus10042496 [exp] 43 / 4e-05 AT3G14760 65 / 1e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G130600 [exp] 71 / 1e-15 AT1G49000 77 / 2e-18 unknown protein Potri.012G059500 [exp] 57 / 1e-10 AT1G49000 111 / 1e-31 unknown protein Potri.005G198200 [exp] 49 / 7e-08 AT1G71740 112 / 5e-33 unknown protein Potri.011G103500 [exp] 48 / 5e-07 AT3G14760 121 / 6e-35 unknown protein Potri.001G382800 [exp] 45 / 4e-06 AT3G14760 109 / 3e-30 unknown protein Potri.004G088300 [exp] 40 / 0.0001 AT1G49000 50 / 4e-08 unknown protein Potri.017G128700 [exp] 39 / 0.0006 AT3G18560 48 / 3e-07 unknown protein Potri.006G226200 [exp] 39 / 0.001 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034266 pacid=23175875 polypeptide=Lus10034266 locus=Lus10034266.g ID=Lus10034266.BGIv1.0 annot-version=v1.0 ATGGCGCGGCTGCTCCTTCTTCTTGAGCGAGGGGTGATGGTGACGGGTCATGGTAATGGATTTGGATCCATACCTCTGGCCATCGGGTTGTTCTTGGCGG TCGGGGTTCTGGTGGGATTATGCGCCCATCAGCCGGCGGCGAAGGAAAAGCCGGATACTCCGGCGAACAAGAAGACTTCTTCGAAGAAAAAATTGGTTAC GAGGACGTTTAGCCGAAACAAGACGAATTCGGATAAGAACCGAGAGGGCGGCGGCGACGATCACGAGCACGAGATTAGAGTAGACATCAGCGCTCAAATG CCGGTTCCTCTGTCTCCGCCACCGCCGCCTCCGCCGCAGAGGAAGAACGGAGGTAGGAAGGAGGGGAGCGGCGGCGGTGGGTATGAGAAGAAGGGGAAGA TGGGTGGAGAGAAACTGACGAGGGGAGGGTTTGGGGAAGGAGGGTTGTGGCAGAAATCGATACTGAGAGGTGAGAAATGTCAGCTGCCGGAGTTTTCTGG GGTCATTTTTTACGACAGCAGGGGAAACCAACTCCATCTTACCAGTTGA
AA sequence Show only first row Show all	>Lus10034266 pacid=23175875 polypeptide=Lus10034266 locus=Lus10034266.g ID=Lus10034266.BGIv1.0 annot-version=v1.0 MARLLLLLERGVMVTGHGNGFGSIPLAIGLFLAVGVLVGLCAHQPAAKEKPDTPANKKTSSKKKLVTRTFSRNKTNSDKNREGGGDDHEHEIRVDISAQM PVPLSPPPPPPPQRKNGGRKEGSGGGGYEKKGKMGGEKLTRGGFGEGGLWQKSILRGEKCQLPEFSGVIFYDSRGNQLHLTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71740			unknown protein		Lus10034266 [exp]	0	1
AT5G37478			TPX2 (targeting protein for Xk...		Lus10020800 [exp]	4.2	0.9658
AT5G61340			unknown protein		Lus10034727 [exp]	8.9	0.9606
AT1G11655			unknown protein		Lus10020050 [exp]	13.0	0.9523
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008226 [exp]	14.8	0.9533
AT3G61750			Cytochrome b561/ferric reducta...		Lus10012625 [exp]	15.2	0.9533
AT5G59350			unknown protein		Lus10016568 [exp]	17.9	0.9428
AT5G61340			unknown protein		Lus10021641 [exp]	20.0	0.9508
AT2G17940			Plant protein of unknown funct...		Lus10041916 [exp]	21.1	0.9522
AT1G21510			unknown protein		Lus10018955 [exp]	21.9	0.9402
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036111 [exp]	23.3	0.9415

Compare expression of checked genes

Lus10034266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.