Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25682 478 / 7e-172 Family of unknown function (DUF572) (.1) AT1G17130 86 / 5e-19 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) AT3G43250 67 / 1e-12 Family of unknown function (DUF572) (.1) AT2G32050 59 / 5e-10 Family of unknown function (DUF572) (.1) AT2G29430 52 / 7e-09 Family of unknown function (DUF572) (.1) AT1G25988 0 / 1 Family of unknown function (DUF572) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041495 [exp] 600 / 0 AT1G25682 467 / 1e-166 Family of unknown function (DUF572) (.1) Lus10005575 [exp] 83 / 7e-18 AT1G17130 391 / 1e-136 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Lus10013707 [exp] 81 / 6e-17 AT1G17130 391 / 8e-137 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Lus10013706 [exp] 75 / 2e-16 AT1G17130 293 / 5e-101 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G115700 [exp] 518 / 0 AT1G25682 446 / 7e-159 Family of unknown function (DUF572) (.1) Potri.010G130300 [exp] 494 / 2e-178 AT1G25682 436 / 3e-155 Family of unknown function (DUF572) (.1) Potri.011G096100 [exp] 79 / 2e-16 AT1G17130 375 / 1e-130 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Potri.001G377800 [exp] 75 / 3e-15 AT1G17130 396 / 1e-138 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04502 [flax] [poplar] DUF572 Family of unknown function (DUF572)
Representative CDS sequence Show only first row Show all	>Lus10034268 pacid=23176108 polypeptide=Lus10034268 locus=Lus10034268.g ID=Lus10034268.BGIv1.0 annot-version=v1.0 ATGTCGACCCTTGCAGCTGCAAGAGCAGACAACTTTTACTACCCCCCAGAATGGACACCGAAGAAGGGTTCCTTAAACAAGTTCAACGGACAACATGCCT TAAGGGAGAGAGCAAAAAAGATAGACCAGGGCATTCTGGTTATAAGATTCGAGATGCCATACAACATATGGTGTGGGGGTTGCAATTCTATGATTGCAAA AGGTGTTCGGTTTAATGCAGAGAAGAAACAAGTGGGGAACTACTATTCTACTAAGATATGGAGCTTTTCCATGAAAGCTGCATGCTGCAGCCATGAGATA GTGATTCAGACAGATCCAAAGAATTGTGAATATGTGATCATTAGTGGAGCGCAGAAAAAGGTTGAGGAGTTTGACAATGAGGATGCTGAGACGCTTCTAC TCCCAGCTGACGAAGAGAAGGGAAAACTGTCCGATCCATTTTATCGTCTGGAGCACCAAGAAGAGGACTTGAAGAAAAAGAAAGAAGCTGAACCGGTTCT GGTGCGACTGCAACGGGTATCCGACTCTAGACATTCAGATGACTACGCACTGAACAAGGCCCTTCGTGCCCGTCTAAGAGGCCAAAAGAAACGAATTGCA GAAGAGGAGAGTGCTGCAAGGAAAAGGGGGTTTGGAATGCGGTTGCTTCCAAGCAGTGCGGAAGATTCAGCAGCAGCAGCCAACGTGAAATTCCCTGGCA AGTTTGAGAGGAATAGGAGGGACAAGCGAGCACTGATAAACTCTGCATCTATATTTCCGGATTCATCAGGGACTAGTAAAAGGCATCAAGAGCTGGAAGC AAAGAGGAGGAAAATAAGTGCAGCGGCAGCAAATAAGTTGCTAACAGGGGGATTCAAGCCATCTTCATGGTCACAGAGCGCCCCTCCTTTGAGGAGACGG AAGTGA
AA sequence Show only first row Show all	>Lus10034268 pacid=23176108 polypeptide=Lus10034268 locus=Lus10034268.g ID=Lus10034268.BGIv1.0 annot-version=v1.0 MSTLAAARADNFYYPPEWTPKKGSLNKFNGQHALRERAKKIDQGILVIRFEMPYNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFSMKAACCSHEI VIQTDPKNCEYVIISGAQKKVEEFDNEDAETLLLPADEEKGKLSDPFYRLEHQEEDLKKKKEAEPVLVRLQRVSDSRHSDDYALNKALRARLRGQKKRIA EEESAARKRGFGMRLLPSSAEDSAAAANVKFPGKFERNRRDKRALINSASIFPDSSGTSKRHQELEAKRRKISAAAANKLLTGGFKPSSWSQSAPPLRRR K

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25682			Family of unknown function (DU...		Lus10034268 [exp]	0	1
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10010293 [exp]	2.4	0.8908
AT4G39235			unknown protein		Lus10021065 [exp]	3.5	0.8711
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10002264 [exp]	5.7	0.8756
AT1G04290			Thioesterase superfamily prote...		Lus10019228 [exp]	6.5	0.8660
AT2G37480			unknown protein		Lus10023755 [exp]	7.6	0.8863
AT3G15352		ATCOX17	ARABIDOPSIS THALIANA CYTOCHROM...		Lus10037356 [exp]	8.5	0.8773
AT1G56423			unknown protein		Lus10020695 [exp]	8.9	0.8634
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Lus10037699 [exp]	10.0	0.8743
AT5G57860			Ubiquitin-like superfamily pro...		Lus10035816 [exp]	19.3	0.8417
AT2G35330			RING/U-box superfamily protein...		Lus10004557 [exp]	20.1	0.8593

Compare expression of checked genes

Lus10034268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.