Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041494 [exp] 71 / 3e-14 AT3G25700 559 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034269 pacid=23175874 polypeptide=Lus10034269 locus=Lus10034269.g ID=Lus10034269.BGIv1.0 annot-version=v1.0 ATGCTTCAGCTTCGTTTCGCGTCCGGAGCTGGTGTTAAGCGTCGTCGTTTCAGTAGAGAAGAACCCACTGGTTTCCGACCCGTCCGAGTACTGGTACTCG TAGCGGCAGGGGCTGTGGAGGCGCGTGAGGTTGCAGGGATTAGGATACGGGTGAGGGACGAATCGGCAGAGGCGATTGAAGCAGTGAGCGAGGGAGAAAG TGGAGGAATGTCGAGATTAAGTCGCTGCCGGTGTCGGCGACGAGGAGGAGGGGCTGCGGCGGCGGGGGGCGGCGAGGAGGGGGGGGGGCTGGGGCGGGGA GCCGAGTCGGAGGGAGACGAAGTACTGGCCGGAGCCGGAGGAGGCGCCGGAGACGAGAGGGGAAGTGAAGGAAGTGCGGTGGCGGTGGAGGTGGGAGAGG CGGCGGGTGTCGTAGGAGAGGGCCTGGAGTGGGGAAGAGAATGGAGGGTTGTGGAGCAATGGGAGTTTGAGGGAGTGCTGTTGGTCGGCGGCGGCGGTCG AATGGAGGATGAAAAGGAGAAGGAAGAAGAAGAAAGAGAAGGGGGAGAGAGATACGATTACCATTGCTGGTTTTAG
AA sequence Show only first row Show all	>Lus10034269 pacid=23175874 polypeptide=Lus10034269 locus=Lus10034269.g ID=Lus10034269.BGIv1.0 annot-version=v1.0 MLQLRFASGAGVKRRRFSREEPTGFRPVRVLVLVAAGAVEAREVAGIRIRVRDESAEAIEAVSEGESGGMSRLSRCRCRRRGGGAAAAGGGEEGGGLGRG AESEGDEVLAGAGGGAGDERGSEGSAVAVEVGEAAGVVGEGLEWGREWRVVEQWEFEGVLLVGGGGRMEDEKEKEEEEREGGERYDYHCWF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034269 [exp]	0	1
					Lus10007785 [exp]	2.6	0.7721
					Lus10015131 [exp]	6.7	0.8118
					Lus10004903 [exp]	8.0	0.7469
					Lus10020961 [exp]	8.7	0.7403
					Lus10016642 [exp]	9.5	0.7346
					Lus10004133 [exp]	9.5	0.7742
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10004944 [exp]	11.0	0.7716
AT5G66650			Protein of unknown function (D...		Lus10005312 [exp]	11.0	0.7521
AT4G15620			Uncharacterised protein family...		Lus10012562 [exp]	11.3	0.8009
AT3G26310		CYP71B35	"cytochrome P450, family 71, s...		Lus10006443 [exp]	12.8	0.7737

Compare expression of checked genes

Lus10034269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.