Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25700 234 / 1e-75 Eukaryotic aspartyl protease family protein (.1.2) AT2G42980 118 / 5e-31 Eukaryotic aspartyl protease family protein (.1) AT2G03200 108 / 1e-27 Eukaryotic aspartyl protease family protein (.1) AT1G01300 108 / 1e-27 Eukaryotic aspartyl protease family protein (.1) AT3G59080 108 / 2e-27 Eukaryotic aspartyl protease family protein (.1.2) AT3G61820 106 / 6e-27 Eukaryotic aspartyl protease family protein (.1) AT5G45120 98 / 6e-24 Eukaryotic aspartyl protease family protein (.1) AT1G25510 97 / 2e-23 Eukaryotic aspartyl protease family protein (.1) AT1G09750 92 / 8e-22 Eukaryotic aspartyl protease family protein (.1) AT3G18490 86 / 9e-20 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041494 [exp] 348 / 2e-120 AT3G25700 559 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10020759 [exp] 113 / 7e-31 AT3G59080 386 / 1e-133 Eukaryotic aspartyl protease family protein (.1.2) Lus10025702 [exp] 111 / 2e-28 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 109 / 6e-28 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035961 [exp] 108 / 9e-28 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 106 / 6e-27 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10029408 [exp] 88 / 2e-20 AT3G52500 466 / 5e-162 Eukaryotic aspartyl protease family protein (.1) Lus10004204 [exp] 85 / 4e-19 AT3G52500 457 / 2e-158 Eukaryotic aspartyl protease family protein (.1) Lus10005211 [exp] 80 / 1e-18 AT3G52500 179 / 2e-54 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G115900 [exp] 236 / 2e-76 AT3G25700 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.001G306200 [exp] 118 / 1e-31 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 113 / 3e-29 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.019G002100 [exp] 111 / 6e-29 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 110 / 2e-28 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 106 / 7e-27 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 100 / 6e-25 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G113100 [exp] 99 / 4e-24 AT5G45120 588 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.012G118000 [exp] 97 / 1e-23 AT5G45120 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G162400 [exp] 94 / 1e-22 AT3G52500 396 / 1e-134 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034270 pacid=23175895 polypeptide=Lus10034270 locus=Lus10034270.g ID=Lus10034270.BGIv1.0 annot-version=v1.0 ATGATCGGCGGCGACGGAGGCGGAGGAGGAGGATCTGAATCGGATGCCGAATCAATGGACTTTACGCCGTTAATCGTCAACCCACTTTCCCCAACTTTTT ACTACATCGGGATCCGGAGCGTCTCCGTTAGCGGCGTGAAATTACCGATCGACCCTTCCGTTTGGTCGATGGACGAGTTAGGTAACGGAGGCATGGTGGT CGATTCCGGGACCACACTTACGTTTTTACCCGAAGCGGCGTACGGGGTGATTCTAACAGCGTTTAGACGGCGGATTAAGCTACCGGTTGCGGCGAATCCA ACTCCTGGGTTCGATCTGTGCGTGAACGTGTCAGGGGAGTCGAGAAGGCCGAGCTTCCCGGCGATGAAGTTGGAGCTAGGAGGTGGATCGGTGTATTCGC CTCCGGCGGGGAACTATTTCATAGGGACGAGTGAGGGAGTGATGTGCTTAGCGATTCAAGGAGTGAAAACAGGGGAAGGTTTCGGGGTGATAGGGAATCT GATGCAACAAGGATATTTGTTGGAGTTCGATAGAGACAGATCCCGGCTCGGTTTTTCGCGCCGTGGATGCGCTCTTCCTTGA
AA sequence Show only first row Show all	>Lus10034270 pacid=23175895 polypeptide=Lus10034270 locus=Lus10034270.g ID=Lus10034270.BGIv1.0 annot-version=v1.0 MIGGDGGGGGGSESDAESMDFTPLIVNPLSPTFYYIGIRSVSVSGVKLPIDPSVWSMDELGNGGMVVDSGTTLTFLPEAAYGVILTAFRRRIKLPVAANP TPGFDLCVNVSGESRRPSFPAMKLELGGGSVYSPPAGNYFIGTSEGVMCLAIQGVKTGEGFGVIGNLMQQGYLLEFDRDRSRLGFSRRGCALP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25700			Eukaryotic aspartyl protease f...		Lus10034270 [exp]	0	1
AT3G25700			Eukaryotic aspartyl protease f...		Lus10041494 [exp]	2.2	0.8545
AT1G28240			Protein of unknown function (D...		Lus10001446 [exp]	3.9	0.7940
AT1G12460			Leucine-rich repeat protein ki...		Lus10007020 [exp]	5.3	0.7840
AT1G06850	bZIP	ATBZIP52	basic leucine-zipper 52 (.1.2)		Lus10009907 [exp]	10.0	0.7953
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Lus10029253 [exp]	17.5	0.7717
AT1G08530			unknown protein		Lus10021985 [exp]	18.5	0.7414
AT1G06850	bZIP	ATBZIP52	basic leucine-zipper 52 (.1.2)		Lus10024204 [exp]	18.7	0.7731
AT5G10160			Thioesterase superfamily prote...		Lus10020419 [exp]	23.3	0.7705
AT5G14450			GDSL-like Lipase/Acylhydrolase...		Lus10014592 [exp]	25.0	0.7510
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10010472 [exp]	28.8	0.7669

Compare expression of checked genes

Lus10034270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.