Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68810 204 / 2e-63 bHLH bHLH030 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G25710 185 / 3e-56 bHLH TMO5, BHLH32, bHLH032, ATAIG1 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) AT3G56770 130 / 2e-36 bHLH bHLH107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G41130 126 / 2e-34 bHLH bHLH106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G40200 114 / 6e-30 bHLH bHLH051 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G38070 93 / 1e-20 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G46760 63 / 1e-10 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G00050 61 / 3e-10 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G17880 61 / 4e-10 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT2G46510 61 / 5e-10 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041493 [exp] 463 / 1e-165 AT3G25710 201 / 2e-62 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) Lus10035056 [exp] 222 / 5e-70 AT1G68810 321 / 6e-108 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021711 [exp] 220 / 4e-69 AT1G68810 310 / 1e-103 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018020 [exp] 138 / 8e-39 AT2G41130 206 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042017 [exp] 135 / 1e-37 AT2G41130 204 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007502 [exp] 113 / 7e-30 AT2G40200 163 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10013917 [exp] 110 / 2e-28 AT2G40200 122 / 2e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10038306 [exp] 105 / 9e-27 AT3G56770 102 / 2e-26 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10028978 [exp] 105 / 1e-26 AT2G40200 157 / 8e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G116000 [exp] 217 / 2e-68 AT1G68810 259 / 5e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G130000 [exp] 216 / 9e-68 AT1G68810 269 / 1e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G037100 [exp] 162 / 1e-48 AT2G41130 229 / 2e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G035400 [exp] 150 / 1e-43 AT2G41130 231 / 2e-76 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G089000 [exp] 122 / 1e-32 AT1G68810 122 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G070800 [exp] 120 / 3e-32 AT2G40200 132 / 2e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G105300 [exp] 114 / 6e-30 AT3G56770 110 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.013G117600 [exp] 112 / 5e-29 AT3G56770 112 / 8e-30 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.010G186700 [exp] 108 / 1e-27 AT2G40200 132 / 3e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G055700 [exp] 104 / 4e-26 AT2G41130 120 / 1e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10034271 pacid=23175980 polypeptide=Lus10034271 locus=Lus10034271.g ID=Lus10034271.BGIv1.0 annot-version=v1.0 ATGGAGTACTACGACAACTGCACCGCCTTATACGGCAGCAGCAGCGGCGGAGGAGCTGCAGATTTCATACTCCCGCACCCACCACCGTCGTCTTCATGGG CTTCTACTCTCCCTCATCATCATCCGGGTATATTAGGTCATCAAACCTCTCTCCAATTTCCATACCAAACTGGATCATGGGATGATGATCATGACCCTGC AGATCACCACCTCAGGATAATATCCGATTCCCCACTTGGATTTCCTAATTACATGAACAACATAATGAGGACGTCCACTACTGGGGATGATATTCTCGAT GCAAAGGCACTCGCCGCCTCCAAGAACCACAGCGAAGCCGAGCGCCGCCGACGTCACAGGATCAATACCCACCTCTCCAACCTCCGCTCTTTGCTCCCCA ACACCACCAAAACGGACAAGGCGTCGTTGCTGGCGGAAGTGATCCAACACGTCAAAGACCTCAAACGACAAACCTCTCATCTGATATCCGATGACGAAAT CATCCCTACAGAGGAGGACGATCTGACGGTGGAGGCTGACTCAGTTGACGAGGAGGGTAATTTTGTCATTAAGGCGACACTGTGCTGCCAAGACAGGCAT GACCTCCTCCCTGACCTCATCGCCACCCTCAACTCCTTGCGCCTCCGTACTCTCAAGGCTGAGATCACCACCTTAGCTGGCAGGGTCAAGCACGTCCTAT TCTTCACCGCCGCAGACCGCGACTACTACTCCTCGTCGAGTAACAATAACTCCGACGACGATGATAACCAGGACAATAGTGATGATCAGTCCTACTACCA ACAGCCGCGGATTCAACAACAGTATTGCTTGAGCTCTATCCACGAGGCGTTGAAGGCTGTTATGGAGAAGGGCGGCGGCGGCGGCGGCCACTCGTCTTCC GGTGGGAGTGTGAAACGGCAACGTACTAATAGGAATAACAATATCTAA
AA sequence Show only first row Show all	>Lus10034271 pacid=23175980 polypeptide=Lus10034271 locus=Lus10034271.g ID=Lus10034271.BGIv1.0 annot-version=v1.0 MEYYDNCTALYGSSSGGGAADFILPHPPPSSSWASTLPHHHPGILGHQTSLQFPYQTGSWDDDHDPADHHLRIISDSPLGFPNYMNNIMRTSTTGDDILD AKALAASKNHSEAERRRRHRINTHLSNLRSLLPNTTKTDKASLLAEVIQHVKDLKRQTSHLISDDEIIPTEEDDLTVEADSVDEEGNFVIKATLCCQDRH DLLPDLIATLNSLRLRTLKAEITTLAGRVKHVLFFTAADRDYYSSSSNNNSDDDDNQDNSDDQSYYQQPRIQQQYCLSSIHEALKAVMEKGGGGGGHSSS GGSVKRQRTNRNNNI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10034271 [exp]	0	1
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012869 [exp]	2.8	0.9281
AT5G06080	AS2	LBD33	LOB domain-containing protein ...		Lus10040274 [exp]	5.7	0.8978
AT1G47750		PEX11A	peroxin 11A (.1)		Lus10003945 [exp]	10.8	0.9135
AT5G51680			hydroxyproline-rich glycoprote...		Lus10015024 [exp]	10.9	0.9051
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10010871 [exp]	12.1	0.9146
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10031621 [exp]	17.8	0.9125
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10013155 [exp]	23.8	0.9070
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012306 [exp]	25.3	0.9060
AT5G59790			Domain of unknown function (DU...		Lus10040860 [exp]	27.7	0.8459
AT2G27430			ARM repeat superfamily protein...		Lus10001881 [exp]	28.6	0.8813

Compare expression of checked genes

Lus10034271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.