Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13245 56 / 6e-13 RTFL17, DVL4 DEVIL 4, ROTUNDIFOLIA like 17 (.1) AT1G68825 53 / 1e-11 DVL5, RTFL15 DEVIL 5, ROTUNDIFOLIA like 15 (.1.2) AT1G67265 53 / 1e-11 DVL3, RTFL21 DEVIL 3, ROTUNDIFOLIA like 21 (.1) AT3G25717 52 / 3e-11 RTFL16, DVL6 DEVIL 6, ROTUNDIFOLIA like 16 (.1) AT3G02493 47 / 5e-09 DVL2, RTFL19, DVL12 DEVIL 2, ROTUNDIFOLIA like 19 (.1) AT5G16023 46 / 1e-08 RTFL18, DVL1 DEVIL 1, ROTUNDIFOLIA like 18 (.1) AT3G55515 45 / 3e-08 DVL8, RTFL7 DEVIL 8, ROTUNDIFOLIA like 7 (.1) AT4G13395 44 / 5e-08 DVL10, RTFL12 DEVIL 10, ROTUNDIFOLIA like 12 (.1) AT1G64585 43 / 2e-07 RTFL22, DVL12 DEVIL 12, ROTUNDIFOLIA like 22 (.1) AT2G36985 42 / 2e-07 DVL16, ROT4 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041491 [exp] 64 / 2e-15 AT1G13245 66 / 1e-16 DEVIL 4, ROTUNDIFOLIA like 17 (.1) Lus10028393 [exp] 45 / 4e-08 AT4G35783 60 / 5e-14 DEVIL 17, ROTUNDIFOLIA like 6 (.1) Lus10041846 [exp] 44 / 7e-08 AT4G35783 59 / 1e-13 DEVIL 17, ROTUNDIFOLIA like 6 (.1) Lus10002705 [exp] 42 / 6e-07 AT2G39705 86 / 1e-23 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Lus10023399 [exp] 42 / 8e-07 AT2G39705 91 / 3e-25 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Lus10026526 [exp] 41 / 2e-06 AT2G36985 63 / 2e-15 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Lus10040784 [exp] 41 / 3e-06 AT5G59510 84 / 1e-21 DEVIL 18, ROTUNDIFOLIA like 5 (.1) Lus10034071 [exp] 39 / 5e-06 AT5G16023 56 / 2e-12 DEVIL 1, ROTUNDIFOLIA like 18 (.1) Lus10003079 [exp] 39 / 6e-06 AT5G16023 55 / 3e-12 DEVIL 1, ROTUNDIFOLIA like 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G116700 [exp] 57 / 2e-13 AT1G13245 76 / 6e-21 DEVIL 4, ROTUNDIFOLIA like 17 (.1) Potri.010G129600 [exp] 57 / 2e-13 AT1G13245 75 / 1e-20 DEVIL 4, ROTUNDIFOLIA like 17 (.1) Potri.004G102950 [exp] 53 / 2e-11 AT1G67265 64 / 4e-16 DEVIL 3, ROTUNDIFOLIA like 21 (.1) Potri.017G112100 [exp] 52 / 4e-11 AT1G67265 62 / 1e-15 DEVIL 3, ROTUNDIFOLIA like 21 (.1) Potri.014G138900 [exp] 45 / 1e-08 AT3G63088 56 / 7e-13 DEVIL 14, ROTUNDIFOLIA like 14 (.1) Potri.008G035900 [exp] 45 / 2e-08 AT2G36985 66 / 1e-16 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Potri.010G226250 [exp] 44 / 7e-08 AT2G36985 67 / 3e-17 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Potri.010G201700 [exp] 44 / 1e-07 AT2G39705 72 / 2e-18 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Potri.008G057800 [exp] 43 / 3e-07 AT2G39705 84 / 8e-23 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Potri.001G242800 [exp] 43 / 4e-07 AT2G29125 71 / 4e-17 DEVIL 13, ROTUNDIFOLIA like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08137 [flax] [poplar] DVL DVL family
Representative CDS sequence Show only first row Show all	>Lus10034272 pacid=23175854 polypeptide=Lus10034272 locus=Lus10034272.g ID=Lus10034272.BGIv1.0 annot-version=v1.0 ATGAAGATGATGGCCAGTAATGGTGCTAGTACTACTGCAAGGATGGTGGGTTCAGGAGGAGGGTCAAAGAGAAGGGTATCATCAAGTAAGCTTGGAGCTG CCCTCCGAGAGCAAAGGGCTAGGCTTTACATCATCAGGAGATGCGTTGTTATGCTCCTCTGCTGGCATGATTAA
AA sequence Show only first row Show all	>Lus10034272 pacid=23175854 polypeptide=Lus10034272 locus=Lus10034272.g ID=Lus10034272.BGIv1.0 annot-version=v1.0 MKMMASNGASTTARMVGSGGGSKRRVSSSKLGAALREQRARLYIIRRCVVMLLCWHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13245		RTFL17, DVL4	DEVIL 4, ROTUNDIFOLIA like 17 ...		Lus10034272 [exp]	0	1
AT2G32580			Protein of unknown function (D...		Lus10035349 [exp]	1.4	0.8808
					Lus10035524 [exp]	2.0	0.8645
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10037473 [exp]	7.4	0.8473
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10004684 [exp]	11.0	0.8621
AT4G38840			SAUR-like auxin-responsive pro...		Lus10038191 [exp]	13.7	0.8490
AT5G49800			Polyketide cyclase/dehydrase a...		Lus10026274 [exp]	15.7	0.8100
AT5G49800			Polyketide cyclase/dehydrase a...		Lus10042398 [exp]	16.5	0.8364
AT1G62940		ACOS5	acyl-CoA synthetase 5 (.1)		Lus10025842 [exp]	16.5	0.8619
AT1G17200			Uncharacterised protein family...		Lus10026196 [exp]	16.6	0.8560
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10004685 [exp]	19.7	0.7557

Compare expression of checked genes

Lus10034272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.