Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68830 798 / 0 STN7 STT7 homolog STN7 (.1) AT5G01920 254 / 1e-78 STN8 State transition 8, Protein kinase superfamily protein (.1) AT2G38620 76 / 4e-15 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2) AT3G54180 74 / 4e-14 CDC2B, CDKB1;1 CDC2-LIKE GENE, cyclin-dependent kinase B1;1 (.1) AT1G20930 65 / 3e-11 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT1G76540 65 / 3e-11 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT3G48750 63 / 1e-10 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT5G53450 57 / 2e-08 ORG1 OBP3-responsive gene 1 (.1.2) AT4G09570 55 / 1e-07 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1) AT3G50000 54 / 2e-07 ATCKA2, CKA2 "casein kinase II, alpha chain 2", casein kinase II, alpha chain 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041490 [exp] 793 / 0 AT1G68830 754 / 0.0 STT7 homolog STN7 (.1) Lus10014183 [exp] 256 / 9e-79 AT5G01920 651 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Lus10022730 [exp] 213 / 6e-63 AT5G01920 530 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Lus10040593 [exp] 74 / 4e-14 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10021611 [exp] 74 / 4e-14 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10038813 [exp] 61 / 1e-09 AT5G53450 817 / 0.0 OBP3-responsive gene 1 (.1.2) Lus10038472 [exp] 60 / 2e-09 AT3G45640 535 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10039623 [exp] 58 / 1e-08 AT1G35670 793 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10029547 [exp] 58 / 1e-08 AT1G35670 790 / 0.0 calcium-dependent protein kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G116800 [exp] 804 / 0 AT1G68830 883 / 0.0 STT7 homolog STN7 (.1) Potri.010G129532 [exp] 286 / 1e-94 AT1G68830 296 / 1e-98 STT7 homolog STN7 (.1) Potri.016G138500 [exp] 268 / 2e-83 AT5G01920 596 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Potri.006G109700 [exp] 259 / 2e-80 AT5G01920 597 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Potri.010G129466 [exp] 149 / 2e-42 AT1G68830 207 / 9e-65 STT7 homolog STN7 (.1) Potri.002G003400 [exp] 75 / 1e-14 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.005G257500 [exp] 74 / 3e-14 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.006G113200 [exp] 71 / 2e-13 AT2G38620 545 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.016G142800 [exp] 70 / 7e-13 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.004G133500 [exp] 62 / 2e-10 AT3G48750 540 / 0.0 cell division control 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10034273 pacid=23176039 polypeptide=Lus10034273 locus=Lus10034273.g ID=Lus10034273.BGIv1.0 annot-version=v1.0 ATGGAGTGTGGGGATATCATTTACAGAAGCACTCTGCCGAAATCCAATGCGCTGACCCTCACAGTTCCAGGAGTTGCTCTGGCTCTCAGCGTCGTGTCTT ACCTTTGGGCCACCCCTGGAGTAGCTCCGGGTTTCTTCGATATGTTTGTGCTTGCTTTCGTCGAACGACTGTTTAGAACCAGTTTCAGAAAGGACGATAT TGTTTTGGGGAAGAAGTTGGGCGAAGGAGCTTTTGGAGTTGTCTATAAAGTTTCTGTGGATAAGCCTGCTTCGAAGAAGAAGGGAGGTGAACTTGTATTG AAAAAGGCTACTGAATATGGAGCTGTGGAGATTTGGATGAATGAACGTGTTCGAAGAGCTTGTGCTAGCAGTTGTGCTGAGTATTTGTATGGATTTCTTG AGAACTCTTCAAAGAAAGAAAGTGAGTATTGGCTTCTATGGAAGTTTGAAGGGGAGGCCACTCTCTATGATTTAATGCAGAGCAGAGAGTTCCCTTACAA CCTGGATGTTTGGTACTTGTGTATTTTTCTACAAGTGATCAACTCAAGAATGCCTAAATTTGAGCAGGTTGAGACATTGATTCTAGGCAAGGTTCAGGAT TTACCTAAAGGGTTGGAAAGGGAAAGTAGAATCATTCAAACTATAATGAGTCAGCTCTTATTTGCCTTAGATGGCCTTCACTCTACGGGGATTGTTCATA GGGACATTAAGCCGCAGAATATCATTTTCTCTGAAGGGTCCAGGACGTTCAAGATTATTGATCTTGGAGCTGCAGCAGATTTGCGAGTGGGAATTAACTA TATTCCGAATGAGTTCCTTTTGGATCCCAGGTATGCTGCTCCAGAACAATACATCATGAGCACGCAAACTCCATCTGCACCATCTGCTCCCGTAGCTACA GCACTTTCCCCAGTGCTATGGCAGCTAAATTTGCCTGACAGATTCGATATTTACAGCGCCGGTCTAATCTTTCTACAGATGGCCTTCCCTGGACTTAAAT CAGACAGCAATCTCATACAGTTCAACCGTCAACTGAAAAGATGCGACTATGACTTGGTTGCATGGAGGAAAAGTGCAGAGCCCCGGGCCTCCCAAGAACT AAGGAAGGGCTTCGAACTACTAGATTTAGACGGTGGGATTGGATGGCAACTTCTCACCTCAATGGTACGATACAAAGCACGACAAAGAATAAGTGCCAAG GGAGCTTTAGCCCATCCTTATTTTGATAAGGAAGGGCTATTAGCTCTGTCAGTTATGCAGAACTTGAGGATGCAACTCATTCGAGCTACGCAACAGGATT ATAGTGAAGCTGCAAACTGGATCATTCAGCTAATGGCAAAATCAGGAACTGAGAAAGAGGGTGGCTTTACGGAAGCCCAGCTTCTGGAACTCAGAGAAAG GCAAGAGCCTGGGAAGAAACCAGTGGCTCAAAGGAATGCACTTGCGTCAGCTCTTAGGCTGCAGAGGAAGCTTGTGAAGACATTGAATCAAAGCATGGAC GATCTGAACCAACGCAGAAAGAGTATATGGTGGAGCAGGTGGATCCCGAGAGAGGAATGA
AA sequence Show only first row Show all	>Lus10034273 pacid=23176039 polypeptide=Lus10034273 locus=Lus10034273.g ID=Lus10034273.BGIv1.0 annot-version=v1.0 MECGDIIYRSTLPKSNALTLTVPGVALALSVVSYLWATPGVAPGFFDMFVLAFVERLFRTSFRKDDIVLGKKLGEGAFGVVYKVSVDKPASKKKGGELVL KKATEYGAVEIWMNERVRRACASSCAEYLYGFLENSSKKESEYWLLWKFEGEATLYDLMQSREFPYNLDVWYLCIFLQVINSRMPKFEQVETLILGKVQD LPKGLERESRIIQTIMSQLLFALDGLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAAADLRVGINYIPNEFLLDPRYAAPEQYIMSTQTPSAPSAPVAT ALSPVLWQLNLPDRFDIYSAGLIFLQMAFPGLKSDSNLIQFNRQLKRCDYDLVAWRKSAEPRASQELRKGFELLDLDGGIGWQLLTSMVRYKARQRISAK GALAHPYFDKEGLLALSVMQNLRMQLIRATQQDYSEAANWIIQLMAKSGTEKEGGFTEAQLLELRERQEPGKKPVAQRNALASALRLQRKLVKTLNQSMD DLNQRRKSIWWSRWIPREE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68830		STN7	STT7 homolog STN7 (.1)		Lus10034273 [exp]	0	1
AT3G56010			unknown protein		Lus10040939 [exp]	1.4	0.9155
AT1G68830		STN7	STT7 homolog STN7 (.1)		Lus10041490 [exp]	2.2	0.8772
AT5G61040			unknown protein		Lus10021155 [exp]	2.4	0.8891
AT1G75100		JAC1	J-domain protein required for ...		Lus10018811 [exp]	2.4	0.8853
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10025080 [exp]	3.5	0.8807
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10011115 [exp]	5.7	0.8697
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10043235 [exp]	6.7	0.8675
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10043453 [exp]	6.9	0.8557
AT5G47435			formyltetrahydrofolate deformy...		Lus10028958 [exp]	8.1	0.8548
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10024003 [exp]	8.9	0.8671

Compare expression of checked genes

Lus10034273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.