Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25570 838 / 0 Di-glucose binding protein with Leucine-rich repeat domain (.1) AT1G28340 281 / 3e-86 AtRLP4 receptor like protein 4 (.1) AT2G14440 115 / 2e-26 Leucine-rich repeat protein kinase family protein (.1) AT2G28990 113 / 6e-26 Leucine-rich repeat protein kinase family protein (.1) AT2G28960 113 / 7e-26 Leucine-rich repeat protein kinase family protein (.1) AT1G49100 110 / 8e-25 Leucine-rich repeat protein kinase family protein (.1) AT3G46400 109 / 1e-24 Leucine-rich repeat protein kinase family protein (.1) AT3G19230 104 / 2e-23 Leucine-rich repeat (LRR) family protein (.1) AT1G07550 105 / 3e-23 Leucine-rich repeat protein kinase family protein (.1) AT3G46340 103 / 1e-22 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041488 [exp] 1097 / 0 AT1G25570 880 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Lus10015417 [exp] 278 / 8e-84 AT1G28340 902 / 0.0 receptor like protein 4 (.1) Lus10013994 [exp] 271 / 2e-82 AT1G28340 908 / 0.0 receptor like protein 4 (.1) Lus10015320 [exp] 267 / 6e-81 AT1G28340 895 / 0.0 receptor like protein 4 (.1) Lus10025849 [exp] 115 / 2e-26 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10025926 [exp] 94 / 1e-19 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019907 [exp] 94 / 2e-19 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10002456 [exp] 90 / 1e-18 AT3G05990 542 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002405 [exp] 88 / 5e-18 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G129300 [exp] 895 / 0 AT1G25570 852 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Potri.008G117000 [exp] 893 / 0 AT1G25570 816 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Potri.011G056800 [exp] 294 / 8e-91 AT1G28340 931 / 0.0 receptor like protein 4 (.1) Potri.004G047300 [exp] 286 / 5e-88 AT1G28340 928 / 0.0 receptor like protein 4 (.1) Potri.006G132100 [exp] 102 / 2e-22 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.008G150200 [exp] 101 / 2e-22 AT3G05990 634 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.009G102300 [exp] 100 / 3e-22 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G090800 [exp] 100 / 3e-22 AT3G05990 650 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G004700 [exp] 96 / 4e-20 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.016G084900 [exp] 95 / 6e-20 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Lus10034275 pacid=23175901 polypeptide=Lus10034275 locus=Lus10034275.g ID=Lus10034275.BGIv1.0 annot-version=v1.0 ATGAGTCCGAATTTTTACACCGACATGAAATCTTTGATGGCAGCGCATCAACCAGTTATTTTGCAAGTAGTTGTTAGCAAGATATTTCCTACCGCATTGA CTCCGGCGGACCTACCAACGTCTCCGACCTCTTCATCCGACCTCTTCAACTCCAATTGGCTCTCTGACCGCTTCTTCACCGGCGGATCCTCCTCCGTCGT CTCCGAGCCCCTCCGCTTCCGCCACCCTCAGGAAAAGACCCTACGCTACTTCCCTCTCTCCTCCGGCAAGAAGAACTGCTACATTCTCCCTCTCCCTTCC GGCCGGTACTACTTCCGCACTTTCACCATATACGACAACTACGACGGCAAGTCCCACTCCCCTAGCTTCGATGTCTCCGTCGAAGGCACTCTCGCCTTCT CCTGGCGCTCCCCCTGGCACGAGTCCCTCGCCCGCGACGGCGCCTACTCCGATCTCTTCGCCTTCGTGAAAGACGGCGAGGCCGATTTCTGCTTCTACAG TATAGCCACCGATCCTCCTGTCATTGGCTCACTTGAAGTCCGCCAGATCGATCCGTTGTCTTACTCATCTTTCTCCCTCGGAGAAAATTTCATCCTGGTC AACTATGGCCGATTGTCATGTGGCTCAGGTCAGTGGGGGCCTGGCTTCAGCAACGACACTGATTACTTTGGCAGAACCTGGCAGTCCGACGAAGAGCTCC GAACCCCCAGCATGTCCAAAATCGTCCAAGCCATCTCCACTACCAAGTCTATTTCTGGGGTCAATCAGCCCCCAAATTACTTCCCGATGAAGCTCTACCA GTCGGCCGTTACAGGTAAGGGAGTGCTGGAGTATGAGATTGAGGTGGACGCGAAGCTTGATTACTTATTGTGGTTCCACTTCGCTGAGATTGAGTCCAGC GTCAACAAGAAAGGACAGCGGGTGTTTGATGTCCTCGTCAATGAGAAGAATGCCAGCAGAGTTGACATATTTGCCCAAGTCGGTAACTTTGCTGCTTACA GTTTTAGCTATACAGTGCATAACTTGAGCAGTACTACTTTGAGTGTGAAGCTAGTGCCGTTAGCTGGCTTTCCTTTGATCGGTGGGATTGAGAATTACGC TCTAGTTCCTAATGATATGGCAACAGTGCCGGAGCAAGTGGTTGCTATGAAAGCGTTGAAAAACTCACTTCGTATTCCGGACAGAATGGGTTGGAATGGT GATCCCTGTGCTCCTACTAATTGGGATGCTTGGGAAGGGGTTACTTGCCATCCCAACAAAAATGAATCCGCCCTTGTTATATCGCAAATAGATCTTGGAA GTCAAGGCCTGAAAGGGTTTGTAAGTGATCAAATAAATCTGCTCACAAATTTGGTAAGCCTGAATTTGAGTGGAAATTCATTGGGAGGAACCCTACCAGA GGGGCTTGGTCAAAAGTCTCTCATACGGCTGGATTTATCAGGCAATCAGTTTTCAGGTCCTATACCAGAAAGTTTAACTTCGTCAAGTCTACAATTAATG TTCTTGAATGATAACTTATTAGAAGGCCGAGTCCCAGAAGAAATTTATTCCATTGGTATGCATGGTGGATCCATCAACCTTTCGGGTAACAAAGGTTTGT GCGGTGTACCTTCATTACCCGACTGCTCCCTACTTTGGGATAATGGTCATTTATCCAAAGGCGGAATTATTGGTATTGCCATAGCGTCCGTGCTGGTATT TTTGGTGATTCTGTTTGTGGTCTATGTTTGTTGCACCAGAAGGGGTAGACATGACTACGATTTCGCTCCTTCTCATGATCTAACGTCAATAGCAGCAAAG AGGAATAGATATCAGAGACAGAAGTCACTGATGCTTCTCGAAATGGAAAGCCAACACGCAAAGGCGTTATCATCACCACAAGGTCTCAACAACTAA
AA sequence Show only first row Show all	>Lus10034275 pacid=23175901 polypeptide=Lus10034275 locus=Lus10034275.g ID=Lus10034275.BGIv1.0 annot-version=v1.0 MSPNFYTDMKSLMAAHQPVILQVVVSKIFPTALTPADLPTSPTSSSDLFNSNWLSDRFFTGGSSSVVSEPLRFRHPQEKTLRYFPLSSGKKNCYILPLPS GRYYFRTFTIYDNYDGKSHSPSFDVSVEGTLAFSWRSPWHESLARDGAYSDLFAFVKDGEADFCFYSIATDPPVIGSLEVRQIDPLSYSSFSLGENFILV NYGRLSCGSGQWGPGFSNDTDYFGRTWQSDEELRTPSMSKIVQAISTTKSISGVNQPPNYFPMKLYQSAVTGKGVLEYEIEVDAKLDYLLWFHFAEIESS VNKKGQRVFDVLVNEKNASRVDIFAQVGNFAAYSFSYTVHNLSSTTLSVKLVPLAGFPLIGGIENYALVPNDMATVPEQVVAMKALKNSLRIPDRMGWNG DPCAPTNWDAWEGVTCHPNKNESALVISQIDLGSQGLKGFVSDQINLLTNLVSLNLSGNSLGGTLPEGLGQKSLIRLDLSGNQFSGPIPESLTSSSLQLM FLNDNLLEGRVPEEIYSIGMHGGSINLSGNKGLCGVPSLPDCSLLWDNGHLSKGGIIGIAIASVLVFLVILFVVYVCCTRRGRHDYDFAPSHDLTSIAAK RNRYQRQKSLMLLEMESQHAKALSSPQGLNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25570			Di-glucose binding protein wit...		Lus10034275 [exp]	0	1
AT1G12460			Leucine-rich repeat protein ki...		Lus10007020 [exp]	2.0	0.7987
AT3G02900			unknown protein		Lus10009524 [exp]	2.0	0.7846
AT2G32580			Protein of unknown function (D...		Lus10029975 [exp]	4.6	0.7837
AT2G40300		ATFER4	ferritin 4 (.1)		Lus10017433 [exp]	8.7	0.7269
AT3G20790			NAD(P)-binding Rossmann-fold s...		Lus10031814 [exp]	9.5	0.7591
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10015320 [exp]	11.0	0.7397
AT3G11945		PDS2, ATHST	PHYTOENE DESATURATION 2, homog...		Lus10029321 [exp]	12.7	0.7516
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Lus10042564 [exp]	17.0	0.7531
AT1G14020			O-fucosyltransferase family pr...		Lus10037144 [exp]	17.1	0.7602
AT5G23130			Peptidoglycan-binding LysM dom...		Lus10013432 [exp]	18.7	0.7512

Compare expression of checked genes

Lus10034275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.