Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68840 226 / 1e-73 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT1G25560 219 / 2e-70 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) AT1G13260 215 / 4e-69 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT3G25730 174 / 2e-53 AP2_ERF EDF3 ethylene response DNA binding factor 3 (.1) AT3G61970 156 / 8e-47 B3 NGA2 NGATHA2, AP2/B3-like transcriptional factor family protein (.1) AT1G01030 156 / 3e-46 B3 NGA3 NGATHA3, AP2/B3-like transcriptional factor family protein (.1) AT2G46870 154 / 1e-45 B3 NGA1 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) AT4G01500 150 / 6e-44 B3 NGA4 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) AT5G06250 148 / 8e-44 B3 AP2/B3-like transcriptional factor family protein (.1.2) AT3G11580 146 / 1e-43 B3 AP2/B3-like transcriptional factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041487 [exp] 371 / 4e-130 AT1G13260 416 / 8e-146 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10021707 [exp] 211 / 1e-67 AT1G13260 369 / 1e-127 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10021326 [exp] 143 / 1e-41 AT5G06250 202 / 2e-63 AP2/B3-like transcriptional factor family protein (.1.2) Lus10004226 [exp] 131 / 2e-36 AT5G06250 183 / 4e-55 AP2/B3-like transcriptional factor family protein (.1.2) Lus10026212 [exp] 111 / 2e-30 AT1G51120 150 / 4e-44 AP2/B3 transcription factor family protein (.1) Lus10036282 [exp] 102 / 5e-26 AT1G50680 268 / 2e-88 AP2/B3 transcription factor family protein (.1) Lus10025226 [exp] 69 / 2e-13 AT4G32010 808 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10022741 [exp] 68 / 5e-13 AT4G32010 748 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10029431 [exp] 59 / 1e-11 AT2G36080 69 / 3e-16 AP2/B3-like transcriptional factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G117100 [exp] 248 / 8e-82 AT1G25560 422 / 6e-148 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.010G129200 [exp] 244 / 8e-80 AT1G25560 441 / 1e-154 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.014G107200 [exp] 160 / 3e-47 AT2G46870 241 / 6e-77 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.011G149700 [exp] 159 / 1e-46 AT2G46870 218 / 2e-67 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.002G181600 [exp] 158 / 2e-46 AT2G46870 264 / 6e-86 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.001G452200 [exp] 158 / 4e-46 AT2G46870 198 / 4e-60 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.006G208100 [exp] 149 / 2e-43 AT2G36080 228 / 3e-73 AP2/B3-like transcriptional factor family protein (.1.2) Potri.016G074500 [exp] 147 / 9e-43 AT2G36080 219 / 9e-70 AP2/B3-like transcriptional factor family protein (.1.2) Potri.018G109201 [exp] 118 / 7e-32 AT1G51120 286 / 8e-95 AP2/B3 transcription factor family protein (.1) Potri.006G186301 [exp] 115 / 1e-30 AT1G51120 287 / 3e-95 AP2/B3 transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10034276 pacid=23175834 polypeptide=Lus10034276 locus=Lus10034276.g ID=Lus10034276.BGIv1.0 annot-version=v1.0 ATGCTGAGGAAACACACTTACAACGACGAGCTCCAGCAGAGCCGCCGTGGCCGCCACCACAACCACCACCGTGGGAAACAGAGCGGCACACTCGATTCCT CCGACAATATTGCTGCCCGGGGAGCCAGGGAGCAGCTGTTCGAGAAGGCGGTGACTCCGAGCGACGTCGGGAAATTGAACCGGCTAGTGATCCCCAAACA GCACGCGGAGAAGCATTTCCCACTCCAGTTTGGCGGCGCCGCCGCCGGAGGAGGAAGCGGCAGCACGAAAGGCGTGCTGCTGAATTTCGAGGACCCCGGA GGGAAAGTGTGGCGGTTCCGGTACTCATACTGGAACAGCAGCCAGAGCTACGTGCTGACGAAAGGATGGAGTCGGTTTGTGAAGGAGAAGAATCTGAAAG CCGGAGATACTGTGAGCTTCCATAGATCCGTTACAGGGCAGGATCAGAAGCAGCTATACATTGACTGGAAGGTCAGGAGTGATGAAGGAGTAGAGTCGAG CCGGTTGGTTTGCAGGGTCCAACCGGTTCAGATGGTTCGGTTATTTGGGGTGAATATATTTAAACCGGTGGACGGTGGGTGTAATGGGAAAAGAACGATG GAGGAGATGGTGGGTTTTCACTGCAGTAAAAAGCAAAGGATCATTGGAGCCTTGTAG
AA sequence Show only first row Show all	>Lus10034276 pacid=23175834 polypeptide=Lus10034276 locus=Lus10034276.g ID=Lus10034276.BGIv1.0 annot-version=v1.0 MLRKHTYNDELQQSRRGRHHNHHRGKQSGTLDSSDNIAARGAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQFGGAAAGGGSGSTKGVLLNFEDPG GKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVSFHRSVTGQDQKQLYIDWKVRSDEGVESSRLVCRVQPVQMVRLFGVNIFKPVDGGCNGKRTM EEMVGFHCSKKQRIIGAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68840	AP2_ERF	EDF2, RAV2, RAP...	TEMPRANILLO 2, RELATED TO AP2 ...		Lus10034276 [exp]	0	1
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10041487 [exp]	1.4	0.7911
AT3G09830			Protein kinase superfamily pro...		Lus10037980 [exp]	9.8	0.7404
AT4G10810			unknown protein		Lus10012620 [exp]	11.5	0.6811
AT5G24690			Protein of unknown function (D...		Lus10001610 [exp]	13.9	0.7043
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10012570 [exp]	17.3	0.7330
AT3G11760			unknown protein		Lus10013598 [exp]	17.8	0.7392
AT4G15545			unknown protein		Lus10012775 [exp]	18.5	0.7295
AT3G44630			Disease resistance protein (TI...		Lus10042777 [exp]	23.5	0.7222
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021436 [exp]	24.0	0.7244
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10015318 [exp]	24.8	0.7285

Compare expression of checked genes

Lus10034276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.