Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48380 168 / 3e-47 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT3G28450 152 / 2e-41 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 144 / 1e-38 Leucine-rich repeat protein kinase family protein (.1) AT1G27190 131 / 4e-34 Leucine-rich repeat protein kinase family protein (.1) AT3G49750 108 / 1e-27 AtRLP44 receptor like protein 44 (.1) AT5G65830 98 / 1e-23 ATRLP57 receptor like protein 57 (.1) AT5G62710 86 / 2e-18 Leucine-rich repeat protein kinase family protein (.1) AT1G55610 85 / 4e-18 BRL1 BRI1 like (.1.2) AT2G23950 81 / 8e-17 Leucine-rich repeat protein kinase family protein (.1) AT4G30520 79 / 6e-16 SARK SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037226 [exp] 191 / 4e-59 AT5G48380 221 / 6e-68 BAK1-interacting receptor-like kinase 1 (.1) Lus10008743 [exp] 196 / 1e-57 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10036697 [exp] 186 / 2e-57 AT5G48380 215 / 8e-66 BAK1-interacting receptor-like kinase 1 (.1) Lus10002147 [exp] 193 / 2e-56 AT5G48380 755 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10030811 [exp] 123 / 4e-31 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041486 [exp] 119 / 9e-31 AT1G69990 134 / 2e-34 Leucine-rich repeat protein kinase family protein (.1) Lus10011561 [exp] 109 / 9e-28 AT3G49750 394 / 7e-140 receptor like protein 44 (.1) Lus10030812 [exp] 107 / 2e-27 AT3G28450 252 / 6e-80 Leucine-rich repeat protein kinase family protein (.1) Lus10019277 [exp] 105 / 1e-26 AT3G49750 399 / 8e-142 receptor like protein 44 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G240000 [exp] 189 / 2e-55 AT5G48380 721 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003800 [exp] 188 / 6e-55 AT5G48380 455 / 1e-153 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G177900 [exp] 179 / 2e-51 AT5G48380 731 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.008G078900 [exp] 173 / 3e-49 AT5G48380 734 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003550 [exp] 160 / 1e-48 AT5G48380 180 / 5e-54 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G004216 [exp] 169 / 2e-47 AT5G48380 412 / 2e-136 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G178050 [exp] 167 / 5e-47 AT5G48380 710 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G074400 [exp] 154 / 2e-42 AT3G28450 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G349900 [exp] 153 / 5e-42 AT3G28450 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G138600 [exp] 144 / 1e-38 AT1G27190 712 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10034278 pacid=23175986 polypeptide=Lus10034278 locus=Lus10034278.g ID=Lus10034278.BGIv1.0 annot-version=v1.0 ATGTCGTCCTTCTTAGTAGCCTGCAGCAGCTCAATTCATCTGCTGCTGTTTGTAATCCTTCATCTTCAACCCCAGTTCTCAAAAGGAAGCATAATATCCG GAAGCAACAGCAGCAGCGGGAGCGACGACATCGTCGGCAGCAAAAACATCGACTGCCTGAAGAAAATACAATCATCCTTCAATGACCCCATCCCATCCTG GAACTTCGACAACGAAACCGACGGATTCGTCTGCGACTTCCCCGGAATCGAATGCTGGCACGTCAACGAGAACAAAATCCTCAACATCAACCTCTCCCAC ATGGGCCTCCGGGGAGAATTCCCTCAGGGGATAAAAAATTGCTCCACTCTCACCAGCTTGAACCTATCCGGGAACCAGCTCTCCGGCTCGATTCCTTCGG ACATCGCCGACAGACTCGAATTTTTGGCCGTTCTGGATCTCTCCAACAACCGTTTCAGCGGCGAAATCCCTTCCAATCTGTTCAATTGCTCGTACCTGAA TGTGCTGAAGCTGGATAACAACCAGCTTTCGGGCCCGATTCCTGGCGGGCTGGCGATGCTTGGCAGGCTGAGGAGTCTCGACGTCTCCAATAATTTGCTG TCTGGGCCCATTCCTGATTTTGGGAGTCGGAATGGTTTGGTTGTTGGGGAAGAGAGCTTTGCTAACAATTCGGGGCTGTGTGGGCTTCCTCTGGAACCTT GTGATGTACCAATTAGCGGTGGTTTTCAGTTGCGAAGTTTCTTTATGAATGGATTCGTGGCTGGGTTTGCGATGTTTGAGCTGTTTGCTCTGACCTTGTT TTACTGGTTCTGTATTCGTCGCAATGCGTCCGCAGCAGCGACAAGGAGGAAGGCCAATGGAGGTGGGAAATGGCGGTCCGTGCCTAATTATGGCCCAGGT ATGAACGTAAAGGTATGTGACGCCATATGGGTGAACCAGATGCCATAA
AA sequence Show only first row Show all	>Lus10034278 pacid=23175986 polypeptide=Lus10034278 locus=Lus10034278.g ID=Lus10034278.BGIv1.0 annot-version=v1.0 MSSFLVACSSSIHLLLFVILHLQPQFSKGSIISGSNSSSGSDDIVGSKNIDCLKKIQSSFNDPIPSWNFDNETDGFVCDFPGIECWHVNENKILNINLSH MGLRGEFPQGIKNCSTLTSLNLSGNQLSGSIPSDIADRLEFLAVLDLSNNRFSGEIPSNLFNCSYLNVLKLDNNQLSGPIPGGLAMLGRLRSLDVSNNLL SGPIPDFGSRNGLVVGEESFANNSGLCGLPLEPCDVPISGGFQLRSFFMNGFVAGFAMFELFALTLFYWFCIRRNASAAATRRKANGGGKWRSVPNYGPG MNVKVCDAIWVNQMP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10034278 [exp]	0	1
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10034279 [exp]	1.4	0.8819
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10032971 [exp]	5.2	0.8032
AT1G27170			transmembrane receptors;ATP bi...		Lus10002232 [exp]	5.7	0.7948
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10032088 [exp]	6.3	0.8137
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10006342 [exp]	8.8	0.7711
AT1G61550			S-locus lectin protein kinase ...		Lus10037730 [exp]	11.6	0.7861
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10016283 [exp]	14.5	0.7483
					Lus10039441 [exp]	17.8	0.7761
AT3G53810			Concanavalin A-like lectin pro...		Lus10008597 [exp]	19.1	0.7638
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10037286 [exp]	20.6	0.7508

Compare expression of checked genes

Lus10034278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.