Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48380 176 / 8e-51 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT1G27190 159 / 8e-45 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 154 / 6e-43 Leucine-rich repeat protein kinase family protein (.1) AT4G23130 145 / 1e-39 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT5G07280 142 / 3e-38 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G02220 141 / 9e-38 ATPSKR1 phytosulfokin receptor 1 (.1) AT5G53890 141 / 1e-37 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT3G28450 140 / 1e-37 Leucine-rich repeat protein kinase family protein (.1) AT5G45780 138 / 4e-37 Leucine-rich repeat protein kinase family protein (.1) AT3G49670 137 / 2e-36 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041486 [exp] 298 / 2e-100 AT1G69990 134 / 2e-34 Leucine-rich repeat protein kinase family protein (.1) Lus10002147 [exp] 174 / 8e-50 AT5G48380 755 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10008743 [exp] 173 / 1e-49 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10030811 [exp] 154 / 7e-43 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013288 [exp] 133 / 3e-37 AT1G27190 390 / 2e-133 Leucine-rich repeat protein kinase family protein (.1) Lus10007292 [exp] 138 / 5e-37 AT5G45780 801 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029241 [exp] 137 / 6e-37 AT5G45780 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10001595 [exp] 135 / 7e-37 AT1G70740 518 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015091 [exp] 138 / 2e-36 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G004900 [exp] 213 / 6e-67 AT5G48380 262 / 2e-81 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003800 [exp] 215 / 6e-66 AT5G48380 455 / 1e-153 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003601 [exp] 205 / 7e-65 AT5G48380 255 / 3e-80 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G004216 [exp] 211 / 6e-64 AT5G48380 412 / 2e-136 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G005001 [exp] 188 / 1e-58 AT5G48380 229 / 7e-71 BAK1-interacting receptor-like kinase 1 (.1) Potri.007G144000 [exp] 183 / 4e-58 AT5G48380 162 / 4e-47 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G007600 [exp] 186 / 3e-56 AT5G48380 208 / 5e-61 BAK1-interacting receptor-like kinase 1 (.1) Potri.008G078900 [exp] 186 / 2e-54 AT5G48380 734 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003251 [exp] 181 / 2e-54 AT5G48380 280 / 1e-88 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G178050 [exp] 185 / 4e-54 AT5G48380 710 / 0.0 BAK1-interacting receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10034279 pacid=23176075 polypeptide=Lus10034279 locus=Lus10034279.g ID=Lus10034279.BGIv1.0 annot-version=v1.0 ATGAGTTACAAGGAAATACAGGAGGCAACCTCCGGATTCAACACCAACAACATAATCGGGTCCGGTAACATTGGAACCATCTACAAGGCTACGCTACCAA GTGGGTGGTTTCTAGCAGTTAAGCGGCTACACCATCCTCCCCAACAATTCAAACACCAATTCATCTCAGAGGTGATGATATTAGGGAGATGGAGGCACAA CAACTTGCTCCCTCTCTTGGGATTCTGCGTCGAAAAGAACCAGAAGCTACTTGTGTACAAGTACATGTCCAACGGCTCCCTCCACGACTGGATTCATGAT ATGGATTCCAAATGCCTCGATTGGCCGTTGCGGTTCAGGATCGCGACTGGTTTAGCGGGAGTGTTGGCATGGCTCCATCACAGCTGCAGTGTTAAGATAT ATCATCTACACATAAACTCCAAGTGCATTTTGCTGGATCAGGGGTTTGAGCCAAAACTGTCGAATTTCGAGAATGCCTTGTTTGTGAACCCGAAAGATCA TGACCGGTCCAGGAATCTGATATTGCATATGGATTTTCTGGAGCTGGGTTATGCCAAGAAGGATGTCCACAGCTTTGGAGTTGTGCTTTTGGAGCTTATT ACTGGACGGAAGGAACTGACGATCACCAACGAAGATTGTTCTTCTGGTGATGGGTTCTGTTTTGAGAAAATTGATAGACGTGTTGTTGGAAGAGGGTATG ATAGGGACATCTTTCAGGCGATGAAAGTTGCATTCGACTGTGCTCAGTTATCGCCTGAAAGAAGGCCAACAATGCTCCAGGTTGTTCAAAGACTTTCTCA AATTGGACAAGGAAGATATGGTTGA
AA sequence Show only first row Show all	>Lus10034279 pacid=23176075 polypeptide=Lus10034279 locus=Lus10034279.g ID=Lus10034279.BGIv1.0 annot-version=v1.0 MSYKEIQEATSGFNTNNIIGSGNIGTIYKATLPSGWFLAVKRLHHPPQQFKHQFISEVMILGRWRHNNLLPLLGFCVEKNQKLLVYKYMSNGSLHDWIHD MDSKCLDWPLRFRIATGLAGVLAWLHHSCSVKIYHLHINSKCILLDQGFEPKLSNFENALFVNPKDHDRSRNLILHMDFLELGYAKKDVHSFGVVLLELI TGRKELTITNEDCSSGDGFCFEKIDRRVVGRGYDRDIFQAMKVAFDCAQLSPERRPTMLQVVQRLSQIGQGRYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10034279 [exp]	0	1
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10032971 [exp]	1.0	0.9126
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10034278 [exp]	1.4	0.8819
AT1G64380	AP2_ERF		Integrase-type DNA-binding sup...		Lus10001898 [exp]	4.0	0.8641
AT3G53810			Concanavalin A-like lectin pro...		Lus10008597 [exp]	5.1	0.8523
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10008523 [exp]	5.9	0.8624
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10026415 [exp]	9.9	0.8558
AT3G57240		BG3	"beta-1,3-glucanase 3", beta-1...		Lus10027859 [exp]	10.7	0.8384
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10029945 [exp]	11.8	0.8617
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10031455 [exp]	12.7	0.8690
AT5G10530			Concanavalin A-like lectin pro...		Lus10007075 [exp]	12.8	0.8493

Compare expression of checked genes

Lus10034279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.