Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13310 248 / 2e-79 Endosomal targeting BRO1-like domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041484 [exp] 439 / 1e-156 AT1G13310 135 / 1e-37 Endosomal targeting BRO1-like domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G128700 [exp] 458 / 1e-161 AT1G13310 299 / 2e-99 Endosomal targeting BRO1-like domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03097 [flax] [poplar] BRO1 BRO1-like domain
Representative CDS sequence Show only first row Show all	>Lus10034281 pacid=23176064 polypeptide=Lus10034281 locus=Lus10034281.g ID=Lus10034281.BGIv1.0 annot-version=v1.0 ATGATGCTGCAGTATCCAGACCTGGCAAAGCTCCAAACTAGAAAGATTGTGTTCGAGGATGTAGTTGCTGCACGTGATTCTGCTACCCTGGAACATCTCA AGGAGTTGAGCTCCAAACGCAAGGCGATTGAAGAGTCCATTAATCAGACAAGCTCCATTACAGAAGCAATTGCTAGGGAAATGTCTGGTGGATTGACTTC TCGTGTTGAGCAGGAACGCCTCAGGCTGGAACAATATCTTCCTCTTTTGGAAAACTTTATGTATCACATAGACTTGGTTAGCAGCAACGGTACAACCACT AAGTGGATTTCACAACTGAAGATAACATGGAGTAGTGCTCTCAGCTCATCTCTATTCTCTATTCTTGGCCCAAAATATTTCCAAATTGATAACATTGGTT TTGAGCTCTGCATGGCTCTTTTCCTTTATGGAGCTGTGCTTCGTGATATAGCTTTGGAACTTTTACAAACAGACGTGAAGAACTCAGCTTTCACCTTCAG ACAAGCAGCTGGTGTTTTTCGGTATCTGGATGATGTAGTTATTCCCTCTTTACAACCTGCAATTGTCAATAGTCCACCTGAAGCTAATTCATCCGTGTGC AATGCTATAAGCTTTGTTTGTCTTGCAGAAGCCCAGTCTATATACATCAGAAGGGCAGAAGAGACGGGTAGTACAAGTTCTGGCGTTTTAGCAAAGCTTC ACCAAGGTGCCTCGGAGTTTTTTGGTGAAGCCATAGTTACATTACATGCTGGTATGGGAGACTGCAAGGGTATCTGTTCACGCTTTATGGAACTTATATA CTCTAGCAAAGCATTGCATGAGTTACAGAGTCACAAGTATCTCGCACGAGGTTTGAAGGACAATGAACAGGTAGGGGTTGCCATTGGCGTTCTTCGTAAC TCATTAGCCGAAGCGAGAAAGAAAATGCCTGGGGACGTTGCTTGGAGAGCTGTCTTTAGCAAGGAAGTTGAGATTGCGGATGATATGTTGCGGAAGTTTG AATATGAGAACGAATTTGTTTGGCATGATAAGATACCTTGTGCGGGTGAGGAGTTGCCACTGCCAGAAGGTAGCAAACTCGTGAAGCCTCAACCTTATGA ACCCAAAAGATTGGAAGTACAACTCGATTTCAAGATATAA
AA sequence Show only first row Show all	>Lus10034281 pacid=23176064 polypeptide=Lus10034281 locus=Lus10034281.g ID=Lus10034281.BGIv1.0 annot-version=v1.0 MMLQYPDLAKLQTRKIVFEDVVAARDSATLEHLKELSSKRKAIEESINQTSSITEAIAREMSGGLTSRVEQERLRLEQYLPLLENFMYHIDLVSSNGTTT KWISQLKITWSSALSSSLFSILGPKYFQIDNIGFELCMALFLYGAVLRDIALELLQTDVKNSAFTFRQAAGVFRYLDDVVIPSLQPAIVNSPPEANSSVC NAISFVCLAEAQSIYIRRAEETGSTSSGVLAKLHQGASEFFGEAIVTLHAGMGDCKGICSRFMELIYSSKALHELQSHKYLARGLKDNEQVGVAIGVLRN SLAEARKKMPGDVAWRAVFSKEVEIADDMLRKFEYENEFVWHDKIPCAGEELPLPEGSKLVKPQPYEPKRLEVQLDFKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13310			Endosomal targeting BRO1-like ...		Lus10034281 [exp]	0	1
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Lus10016791 [exp]	2.6	0.8224
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10018834 [exp]	3.2	0.8223
AT1G80940			unknown protein		Lus10024095 [exp]	4.5	0.8097
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10017796 [exp]	4.6	0.8119
AT1G69360			Plant protein of unknown funct...		Lus10036807 [exp]	10.0	0.7792
AT1G55000			peptidoglycan-binding LysM dom...		Lus10004477 [exp]	10.0	0.8107
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10035099 [exp]	11.2	0.8040
AT1G33490			unknown protein		Lus10039157 [exp]	13.5	0.7926
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10000864 [exp]	17.7	0.7769
AT4G19670			RING/U-box superfamily protein...		Lus10036202 [exp]	19.0	0.7858

Compare expression of checked genes

Lus10034281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.