Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25540 705 / 0 MED25, PFT1 PHYTOCHROME AND FLOWERING TIME 1, mediator 25, phytochrome and flowering time regulatory protein (PFT1) (.1), phytochrome and flowering time regulatory protein (PFT1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041483 [exp] 1188 / 0 AT1G25540 787 / 0.0 PHYTOCHROME AND FLOWERING TIME 1, mediator 25, phytochrome and flowering time regulatory protein (PFT1) (.1), phytochrome and flowering time regulatory protein (PFT1) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G128600 [exp] 867 / 0 AT1G25540 793 / 0.0 PHYTOCHROME AND FLOWERING TIME 1, mediator 25, phytochrome and flowering time regulatory protein (PFT1) (.1), phytochrome and flowering time regulatory protein (PFT1) (.2) Potri.008G117700 [exp] 859 / 0 AT1G25540 780 / 0.0 PHYTOCHROME AND FLOWERING TIME 1, mediator 25, phytochrome and flowering time regulatory protein (PFT1) (.1), phytochrome and flowering time regulatory protein (PFT1) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF11265 [flax] [poplar] Med25_VWA Mediator complex subunit 25 von Willebrand factor type A
Representative CDS sequence Show only first row Show all	>Lus10034282 pacid=23175885 polypeptide=Lus10034282 locus=Lus10034282.g ID=Lus10034282.BGIv1.0 annot-version=v1.0 ATGGCAGAGAAACAGCTCATCGTGGCTGTAGAAGGCACTGCTGCTATGGGACCTTACTGGTCAACAATCGTCTGTGATTACTTGGAAAAGATCATCAGGA ACTTCTGCGGTAGCGACCTGACTGGTCAGAAGACCACTACATCTACTGCTGAGCTCTCTGTGGTTACATTTAACTCTCATGGATCCTATTCTGCATGTTT GGTGCAACGGAGTGGTTGGACGAGAGATGTTGACATCTTTCTTCAATGGTTATCATGCATACCATTTATTGGTGGTGGTTTTAGTGATGCTGCCATTGCA GAAGGGCTATCTGAAGCGCTTATGATGTTCCAAGTTGCTTCTAATGGAAGCCAAAGTCAACAGAATTTGGATTGCCAAAGGCACTGCATCCTTGTTTCTG CAAGTAACCCTTATCCCTTGCCCACACCAGTGTATAGACCACAAATACAAAATTTGGATCAGAGTGATGACAGTGATATGCAGACAGAGAGTCGCTTATC TGATGCAGAAACAGTCGCCAAATCATTTTCTCAGTGCTCTGTTTCTCTGTCAGTGATTTGTCCAAAGCAGCTTTCGAAACTCAGAGCGATCTACATTGCT GGGAAACGCACAAACCGAGGCACAGATCCACCTGTTGACACTGCCAAGAATCCCCATTTTCTTATTCTAATCTCTGATAGTTTCACGGAGGCTTGTGCTT CTCTGAATGGCCCTGGAGCTGCAAATGTACCTCCTACCCAGAGCCCAGTGAAAATGGATGTTTCTTCAGTTAATGCAGTTACAGGACATCCTCCTGCTCA AGTTCCTTCAGCAAATGGCTCTCTAGTCAATCGAGCATCAATTTCTGCTGGAGGTGTTCCAGTTGCAACTGAACCAAGTACAGTGACATCATTACCTGCT GGACCCGGCTTTCAACATCTTCCATCTACTGCACGCCCAGCTGCTCAAGCTGCAAGTTTGCAAACTTCTTCTCCAATGTCAACAACTCAAGAAATGATCT CAAATGCTGACACTGTACAGGACTCAAAACCTGCAGTTAGTGGGGTGCCACAATCTGTTCGTCCAGTTGCTACAGCAGCAGCAAATGTCAGCATACTAAA TAATCTTTCTCAAGCACGTCAAGTGATGAACTCTGCAGCCTTATCAGGTGGGACATCGATGGGTCTTCCATCAATGAGTCAAACTCCTGTTGGCATGCAT ATGTCAAATATGATATCAAGCGGAATGGCTTCATCAGTACCTGCTCAAACTGTTTTCTCATCTGCACAAAATCCAATGACTTCAATAGCAGGATCAGGGA CTCTTCCTGCAACTTCACAAGTTCCCCAGAGCTCTGGTCTTGGTACATTCACTTCTGGATCTTCAAGTGTATCTGGAAATGCAAACCTGGGAATCTCACA ACCAATGAACCATCAGCAAGGGGCTGGCAGTATGGGCCAATCAGTATCAGGAATGAGCCAAGGAAATCTAGTACAAAATGGAATAGGTATGAACCAAAGT ATGATGAATGGTCTCGGACCATCAAGCGTCTCTTCAGGAACTGGCACAATGATTCCTACTCCAGGAATGTCTCAACAAGTGCAAGCTGGGATGCAGCCCC TTGGCGTGGCCAACAATGCAGCGGCTAATATGTCATTGTCGCAGCAGTCAACAAATTCGCTGCAGCCAGCTCAGACTAAATATGTGAAAGTTTGGGAGGG GAATTTGTCTGGGCAGCGGCAGAGGCAGCCTGTCTTCATCACGAAACTGGAGGGTTATAGGAGCGCTTCAGCTTCTGAGACGCTTGCAGCAAATTGGCCA GCAACGATGCAAATTGTTCGGCTGATATCTCAGGACCACATGAATAACAAACAATATGTGGGGAAGGCTGATTTTCTAGTATTTCGAGCGGTGAATCAGC ATGGATTTCTTGGGCAACTGCAAGAGAAGAAGCTTGGTTATAGGAGCGCTTCAGCTTCTGAGACGCTTGCAGCAAATTGGCCAGCAACGATGCAAATTGT TCGGCTGATATCTCAGGACCACATGAATAACAAACAATATGTGGGGAAGGCTGATTTTCTAGTATTTCGAGCGGTGAATCAGCATGGATTTCTTGGGCAA CTGCAAGAGAAGAAGCTTTGTGCGGTGATACAATTACCAACTCAGACATTGTTACTTTCTGTATCTGATAAAGCCTGCCGCTTGATTGGGATGCTTTTTC CTGGGCCGCAGCTCCCGCAACTCCAGCAGCAATTGCAACAACAGCAGCTTCCGCAATTGCAGCAACAACAGCAGCTTCCGCAAATGCAGCAACAACAGCA GCTTCCGCAAATGCAGCAACAACAGCAGCTTCCGCAAATGCAGCAACAACAGCAGCTTCCGCAAATGCAGCAACAACAGCAGCTTCCGCAAATGCAGCAA CAACAGCAGCTTCCGCAAATGCAGCAACAACAGCAGCTTCCGCAAATGCAGCAACAACAGCAGCTTCCGCAAATGCAGCAACAACAGCAGCTTCCGCAAA TGCAGCAACAACAGCAGCTTCCGCAAATGCAGCAACAACAGCAGCTTCCGCAAATGCAGCAACAACAGCAGCTTCCGCAAATGCAGCAACAACAGCAGCT TCCGCAAATGCAGCAACAACAGCAGCTTCCGCAAATGCAGCAACAACAGCAGCTTCCGCAAATGCAGCAACAACAACAGCAGCAGCAGATGGTGGGGAGT GGTATGGGTCAAGGCTATGTTCAAGGTACAGCTGGCAGGTCCCAATTAGTCTCTCAAGGCCAAATGAATTCACAAGGCACATCCAACTTACCCGGAAGTG GCTTCCTGAGTTGA
AA sequence Show only first row Show all	>Lus10034282 pacid=23175885 polypeptide=Lus10034282 locus=Lus10034282.g ID=Lus10034282.BGIv1.0 annot-version=v1.0 MAEKQLIVAVEGTAAMGPYWSTIVCDYLEKIIRNFCGSDLTGQKTTTSTAELSVVTFNSHGSYSACLVQRSGWTRDVDIFLQWLSCIPFIGGGFSDAAIA EGLSEALMMFQVASNGSQSQQNLDCQRHCILVSASNPYPLPTPVYRPQIQNLDQSDDSDMQTESRLSDAETVAKSFSQCSVSLSVICPKQLSKLRAIYIA GKRTNRGTDPPVDTAKNPHFLILISDSFTEACASLNGPGAANVPPTQSPVKMDVSSVNAVTGHPPAQVPSANGSLVNRASISAGGVPVATEPSTVTSLPA GPGFQHLPSTARPAAQAASLQTSSPMSTTQEMISNADTVQDSKPAVSGVPQSVRPVATAAANVSILNNLSQARQVMNSAALSGGTSMGLPSMSQTPVGMH MSNMISSGMASSVPAQTVFSSAQNPMTSIAGSGTLPATSQVPQSSGLGTFTSGSSSVSGNANLGISQPMNHQQGAGSMGQSVSGMSQGNLVQNGIGMNQS MMNGLGPSSVSSGTGTMIPTPGMSQQVQAGMQPLGVANNAAANMSLSQQSTNSLQPAQTKYVKVWEGNLSGQRQRQPVFITKLEGYRSASASETLAANWP ATMQIVRLISQDHMNNKQYVGKADFLVFRAVNQHGFLGQLQEKKLGYRSASASETLAANWPATMQIVRLISQDHMNNKQYVGKADFLVFRAVNQHGFLGQ LQEKKLCAVIQLPTQTLLLSVSDKACRLIGMLFPGPQLPQLQQQLQQQQLPQLQQQQQLPQMQQQQQLPQMQQQQQLPQMQQQQQLPQMQQQQQLPQMQQ QQQLPQMQQQQQLPQMQQQQQLPQMQQQQQLPQMQQQQQLPQMQQQQQLPQMQQQQQLPQMQQQQQLPQMQQQQQLPQMQQQQQLPQMQQQQQQQQMVGS GMGQGYVQGTAGRSQLVSQGQMNSQGTSNLPGSGFLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10034282 [exp]	0	1
AT1G04140			Transducin family protein / WD...		Lus10000495 [exp]	2.8	0.8791
AT1G29370			Kinase-related protein of unkn...		Lus10004604 [exp]	4.2	0.8792
AT5G42220			Ubiquitin-like superfamily pro...		Lus10021830 [exp]	4.6	0.8738
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10011938 [exp]	7.1	0.8543
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Lus10005233 [exp]	7.3	0.8317
AT1G64550		SCORD5, AtGCN20...	susceptible to coronatine-defi...		Lus10032431 [exp]	7.7	0.8632
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10000866 [exp]	8.4	0.8431
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10012434 [exp]	9.8	0.8718
AT5G06590			unknown protein		Lus10021091 [exp]	11.0	0.8636
AT5G19400		SMG7	Telomerase activating protein ...		Lus10009689 [exp]	12.2	0.8211

Compare expression of checked genes

Lus10034282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.