Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27510 182 / 7e-56 Protein kinase superfamily protein (.1) AT3G50310 180 / 2e-54 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT2G42550 178 / 1e-53 Protein kinase superfamily protein (.1) AT3G46140 173 / 2e-51 Protein kinase superfamily protein (.1) AT5G55090 174 / 4e-51 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT5G67080 170 / 2e-50 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT4G36950 167 / 2e-49 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT3G45790 167 / 6e-49 Protein kinase superfamily protein (.1) AT4G26890 168 / 9e-49 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT2G34290 160 / 9e-48 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034288 [exp] 501 / 0 AT3G50310 181 / 5e-55 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034242 [exp] 367 / 2e-128 AT3G50310 190 / 2e-58 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10026894 [exp] 324 / 1e-111 AT3G50310 187 / 1e-57 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10039141 [exp] 264 / 2e-87 AT3G46140 168 / 1e-49 Protein kinase superfamily protein (.1) Lus10029023 [exp] 244 / 4e-81 AT3G50310 147 / 8e-43 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10017114 [exp] 205 / 2e-64 AT3G50310 127 / 3e-34 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034246 [exp] 200 / 5e-64 AT4G36950 107 / 7e-28 mitogen-activated protein kinase kinase kinase 21 (.1) Lus10012668 [exp] 184 / 7e-56 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029019 [exp] 168 / 4e-52 AT3G50310 96 / 3e-24 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G042400 [exp] 199 / 4e-61 AT3G50310 236 / 5e-75 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.009G131100 [exp] 196 / 4e-61 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.003G184200 [exp] 199 / 5e-61 AT4G36950 246 / 8e-79 mitogen-activated protein kinase kinase kinase 21 (.1) Potri.007G044800 [exp] 186 / 9e-57 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.006G181000 [exp] 186 / 1e-56 AT3G45670 213 / 4e-66 Protein kinase superfamily protein (.1) Potri.005G139200 [exp] 181 / 1e-54 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139300 [exp] 173 / 1e-51 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.003G130000 [exp] 164 / 3e-48 AT5G55090 232 / 2e-72 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.004G171500 [exp] 163 / 3e-48 AT3G50310 202 / 7e-63 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.004G007700 [exp] 159 / 2e-45 AT5G55090 321 / 2e-105 mitogen-activated protein kinase kinase kinase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10034285 pacid=23175864 polypeptide=Lus10034285 locus=Lus10034285.g ID=Lus10034285.BGIv1.0 annot-version=v1.0 ATGGAGGATGTTGGATGGACTCGTGGAAAGCGTCTGGGAAAAGGAAGCTTTGGACAGGTATTCATCGCGAACCCCGGAGACCCAACTCTGCCGCCAATGG CTGTGAAGTCGGCGCCAATAGACAAAGCTTCATCCCTCCGCCTGGAGTACGAGATTCTTTCCAAGTTCGACGGCATTCCGGGGATAATCCAGTGTCTCGG CGACGGAATCTCTTACGACCAACCAGACGACGGGGCTACTTACGATTTGATTCTGGAATACGCTGCCGGATCCCTCTTCGACCTTATTGCAAACTGCGGC GGCGGTGGAATTCCGGAGAGGTTCGTTAGGGTTTGGACTCGAACCCTCTTGGAAGCTCTGTTCTCCATCCACTCTGCGGGCTACGTCCATTGCGATATCA AACCGGACAACGTCCTCGTGTTTCCACATTCGACCGGCCATCTGAAGATTGCGGATTTCGGGTTGGCGATTGAGACTCTGGATCTAGACGACCCCAAGAA GAGCCGGAATAATTTCAGGGGGACGCCGAGATACATGCCGCCGGAGGCGGTTGTCCCCGGGAAGGCGTCGCCGGCGATGGACATATGGGCGTTGGGGTGT ACGGTGATTGCGATGCTGACTGGGAAGCCTCCGTTCGAAAGGTTGAAAGAGAATGCGGAAGTGATCAAGGAAATTGCGAAGGGAGGTCAGCCGGAGATTC CGAATTGGCTGTCGGATGAAGGGAAAGATTTCCTGAGGAAGTGTTTCATGAGAAGTCCGACCTACCGCTTGCCGGCGCATAAGCTTCTGTTGCATCCCTT CGTAACCGGCCGTAGTAGTTTCGAGACAACAACACAATTGCAGCAGCAGCGAAGAAATCAGATGTTTGAACAAGCTAGGGCTATTTTGCAGTGCTAG
AA sequence Show only first row Show all	>Lus10034285 pacid=23175864 polypeptide=Lus10034285 locus=Lus10034285.g ID=Lus10034285.BGIv1.0 annot-version=v1.0 MEDVGWTRGKRLGKGSFGQVFIANPGDPTLPPMAVKSAPIDKASSLRLEYEILSKFDGIPGIIQCLGDGISYDQPDDGATYDLILEYAAGSLFDLIANCG GGGIPERFVRVWTRTLLEALFSIHSAGYVHCDIKPDNVLVFPHSTGHLKIADFGLAIETLDLDDPKKSRNNFRGTPRYMPPEAVVPGKASPAMDIWALGC TVIAMLTGKPPFERLKENAEVIKEIAKGGQPEIPNWLSDEGKDFLRKCFMRSPTYRLPAHKLLLHPFVTGRSSFETTTQLQQQRRNQMFEQARAILQC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27510			Protein kinase superfamily pro...		Lus10034285 [exp]	0	1
					Lus10006239 [exp]	5.7	0.6599
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10037670 [exp]	8.1	0.7536
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10011433 [exp]	8.9	0.7059
AT5G04550			Protein of unknown function (D...		Lus10002840 [exp]	10.0	0.6818
AT5G40460			unknown protein		Lus10022268 [exp]	12.6	0.7008
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10024252 [exp]	14.7	0.6495
AT5G28646		WVD2	WAVE-DAMPENED 2, TPX2 (targeti...		Lus10000016 [exp]	16.5	0.6293
AT1G09050			unknown protein		Lus10004495 [exp]	21.6	0.7091
AT5G48385			FRIGIDA-like protein (.1)		Lus10009979 [exp]	28.8	0.6293
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Lus10026044 [exp]	30.5	0.7089

Compare expression of checked genes

Lus10034285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.