Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18030 339 / 4e-120 ATHAL3A HALOTOLERANCE DETERMINANT 3, ARABIDOPSIS THALIANA HAL3-LIKE PROTEIN A, HAL3-like protein A (.1) AT1G48605 327 / 2e-115 ATHAL3B HALOTOLERANCE DETERMINANT 3B, HALOTOLERANCE DETERMINANT 3, Flavoprotein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014795 [exp] 426 / 3e-154 AT3G18030 338 / 6e-120 HALOTOLERANCE DETERMINANT 3, ARABIDOPSIS THALIANA HAL3-LIKE PROTEIN A, HAL3-like protein A (.1) Lus10017923 [exp] 231 / 4e-73 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G089600 [exp] 357 / 4e-127 AT3G18030 348 / 2e-123 HALOTOLERANCE DETERMINANT 3, ARABIDOPSIS THALIANA HAL3-LIKE PROTEIN A, HAL3-like protein A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02441 [flax] [poplar] Flavoprotein Flavoprotein
Representative CDS sequence Show only first row Show all	>Lus10034286 pacid=23175963 polypeptide=Lus10034286 locus=Lus10034286.g ID=Lus10034286.BGIv1.0 annot-version=v1.0 ATGGCGAAAAGAGAAAGAGAGTCGGTTCATCCAACCGCAGAACCCAGAAAGCCTAGGATTCTACTTGCTGCTAGTGGGAGTGTGGCTGCCATCAAGTTTG CAAACCTCTGCCACTGTTTCTCTGATTGGGCCGAGGTGAAAGCGGTTGCTACTAAAGCTTCTCTACATTTCATCGACAGAGCTGCACTTCCCAAGGATGT GCTTCTTTACACAGACGAGGATGAATGGTCGACTTGGAGCAAGATTGGGGATAGTGTGTTGCACATTGAACTCCGCAGATGGGCAGACGTTATGGTTATT GCCCCACTATCAGCCAATACTCTTGGCAAGATTGCTGGGGGATTGTGTGATAACCTGCTGACTTGTGTTGTGAGAGCTTGGGACTATGAGAAGCCTCTGT TCATAGCACCGGCTATGAACACGTTCATGTGGAGGAACCCATTTACAGAAAGGCATTTGATATCAGTAGATGAAATTGGGATTACCATGATCCCACCTGT ATCAAAGAAGCTGGCTTGTGGAGATTATGGTACCGGTGCGATGGCAGAACCGTCTGGGATCAATTCAACTGTGAGGTTGTTCTTACAGTCGAGGAATCAA CAAGGCGAAGGGACAAACAGTTAA
AA sequence Show only first row Show all	>Lus10034286 pacid=23175963 polypeptide=Lus10034286 locus=Lus10034286.g ID=Lus10034286.BGIv1.0 annot-version=v1.0 MAKRERESVHPTAEPRKPRILLAASGSVAAIKFANLCHCFSDWAEVKAVATKASLHFIDRAALPKDVLLYTDEDEWSTWSKIGDSVLHIELRRWADVMVI APLSANTLGKIAGGLCDNLLTCVVRAWDYEKPLFIAPAMNTFMWRNPFTERHLISVDEIGITMIPPVSKKLACGDYGTGAMAEPSGINSTVRLFLQSRNQ QGEGTNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18030		ATHAL3A	HALOTOLERANCE DETERMINANT 3, A...		Lus10034286 [exp]	0	1
AT5G64816			unknown protein		Lus10025266 [exp]	2.0	0.8385
AT5G45920			SGNH hydrolase-type esterase s...		Lus10000525 [exp]	6.2	0.8538
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Lus10034210 [exp]	6.2	0.8608
AT1G03590			Protein phosphatase 2C family ...		Lus10031631 [exp]	11.5	0.8231
AT5G15220			Ribosomal protein L27 family p...		Lus10007170 [exp]	14.5	0.8525
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10030922 [exp]	16.3	0.8371
AT1G08845			Ribosomal L18p/L5e family prot...		Lus10001727 [exp]	20.2	0.8210
AT3G14080			Small nuclear ribonucleoprotei...		Lus10008124 [exp]	22.6	0.8136
					Lus10003137 [exp]	24.5	0.8263
AT5G10070			RNase L inhibitor protein-rela...		Lus10002091 [exp]	24.7	0.8240

Compare expression of checked genes

Lus10034286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.