Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50310 182 / 4e-55 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT5G27510 180 / 7e-55 Protein kinase superfamily protein (.1) AT5G67080 175 / 2e-52 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT2G42550 174 / 4e-52 Protein kinase superfamily protein (.1) AT3G46140 175 / 5e-52 Protein kinase superfamily protein (.1) AT3G45790 168 / 2e-49 Protein kinase superfamily protein (.1) AT5G55090 169 / 3e-49 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT4G36950 165 / 8e-49 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT4G26890 164 / 3e-47 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT2G32510 158 / 1e-45 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034285 [exp] 507 / 0 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1) Lus10034242 [exp] 356 / 7e-124 AT3G50310 190 / 2e-58 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10026894 [exp] 334 / 1e-115 AT3G50310 187 / 1e-57 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10039141 [exp] 279 / 2e-93 AT3G46140 168 / 1e-49 Protein kinase superfamily protein (.1) Lus10029023 [exp] 241 / 1e-79 AT3G50310 147 / 8e-43 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034246 [exp] 200 / 5e-64 AT4G36950 107 / 7e-28 mitogen-activated protein kinase kinase kinase 21 (.1) Lus10017114 [exp] 193 / 6e-60 AT3G50310 127 / 3e-34 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10012668 [exp] 184 / 5e-56 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029019 [exp] 163 / 3e-50 AT3G50310 96 / 3e-24 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131100 [exp] 197 / 1e-61 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.001G042400 [exp] 199 / 3e-61 AT3G50310 236 / 5e-75 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.003G184200 [exp] 194 / 3e-59 AT4G36950 246 / 8e-79 mitogen-activated protein kinase kinase kinase 21 (.1) Potri.006G181000 [exp] 180 / 2e-54 AT3G45670 213 / 4e-66 Protein kinase superfamily protein (.1) Potri.007G044800 [exp] 179 / 8e-54 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139200 [exp] 172 / 2e-51 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139300 [exp] 171 / 1e-50 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.004G007700 [exp] 171 / 1e-49 AT5G55090 321 / 2e-105 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.011G007400 [exp] 166 / 7e-48 AT5G55090 326 / 3e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.004G171500 [exp] 162 / 8e-48 AT3G50310 202 / 7e-63 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10034288 pacid=23175984 polypeptide=Lus10034288 locus=Lus10034288.g ID=Lus10034288.BGIv1.0 annot-version=v1.0 ATGGCGAATGTTGGGTGGACTCGAGGAGAGTGTCTGGGAAAAGGAAGCTTTGGAGAGGTGTTCAAGGCCAACCCCGTAGACCCAACTCTGCCGCCGATGG CTGTGAAGTCTGCGCCGCTAGACGAAGCTTCATCCCTCCGCCTGGAGTACGAGATTCTTTCCAAGTTCGACAGCAATCCGGGGATAACCCAGTGTCTCGG CTACAGAATCTCTCACGACCAACCGGGCGGTAGGTGTACTTACGATTTGATTCTGGAATACGCCGCCGGAGGAGCGCTCTGCGACGTTATCGCGAACTGC GGCGGAGGTGGAATTCCGGAGAGGTTCGTTAGGGTTTGGACTCGAACCCTCTTGGAAGCTCTGTTCTCCATCCACTCTACGGGCTACGTCCATTGCGATA TCAAACCGGACAACATTCTCGTGTTTCCCGATTCGACCGGCCATCTGAAGATTGCGGATTTCGGATTGGCGATTGAGACGCGGGATCTGGACGACCCCAA TAAGAGCGGGAAGAACTTCAGGGGCACGCCGAGGTACGTTCCGCCGGAGGTTGTTGTCTCCGGGAAGGCTTCTCCGGCGATGGATATATGGGCATTGGGA TGTACGGTAGTAGCTATGCTGACGGGGAATCCTCCGTTCGAAAGTTTGAAAGAGAACGCGGAACTGGTAAAGGAAATTGCGAAGGGAGGTCAGCCGGAGA TTCCGAATTGGCTGTCGGATGAAGGGAAAGATTTCCTGAGGAAGTGTTTCATGAGGAGTCCGACCTACCGGTTGCCGGCGCATAAGCTTCTGTTGCATCC CTTCGTGACCAGCCGTTTGGAGAAGCGGAAAACAACAACGCAAGTAGTGCAGGGGAGAAATCAGATGTTTGAACAAGGCAGGGCTATTATGCAGTGCTAG
AA sequence Show only first row Show all	>Lus10034288 pacid=23175984 polypeptide=Lus10034288 locus=Lus10034288.g ID=Lus10034288.BGIv1.0 annot-version=v1.0 MANVGWTRGECLGKGSFGEVFKANPVDPTLPPMAVKSAPLDEASSLRLEYEILSKFDSNPGITQCLGYRISHDQPGGRCTYDLILEYAAGGALCDVIANC GGGGIPERFVRVWTRTLLEALFSIHSTGYVHCDIKPDNILVFPDSTGHLKIADFGLAIETRDLDDPNKSGKNFRGTPRYVPPEVVVSGKASPAMDIWALG CTVVAMLTGNPPFESLKENAELVKEIAKGGQPEIPNWLSDEGKDFLRKCFMRSPTYRLPAHKLLLHPFVTSRLEKRKTTTQVVQGRNQMFEQGRAIMQC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10034288 [exp]	0	1
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10024857 [exp]	2.6	0.8832
AT4G20900		TDM1, MS5	MALE-STERILE 5, Tetratricopept...		Lus10023256 [exp]	6.9	0.7960
AT1G45207			Remorin family protein (.2)		Lus10042649 [exp]	9.2	0.8662
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10034793 [exp]	9.2	0.7792
AT2G48020			Major facilitator superfamily ...		Lus10008179 [exp]	12.7	0.8577
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10031098 [exp]	13.4	0.8705
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10035855 [exp]	18.3	0.8459
AT1G54610			Protein kinase superfamily pro...		Lus10012805 [exp]	19.1	0.8676
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10025980 [exp]	23.2	0.8610
AT4G13150			unknown protein		Lus10038175 [exp]	24.2	0.8168

Compare expression of checked genes

Lus10034288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.