Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56810 50 / 2e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G66310 50 / 3e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56560 49 / 4e-06 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT5G03100 49 / 4e-06 F-box/RNI-like superfamily protein (.1) AT5G53640 49 / 5e-06 unknown protein AT2G39415 46 / 5e-06 F-box family protein (.1) AT3G60790 48 / 8e-06 F-box family protein (.1) AT1G69630 48 / 8e-06 F-box/RNI-like superfamily protein (.1) AT5G02910 48 / 8e-06 F-box/RNI-like superfamily protein (.1.2) AT3G58930 47 / 1e-05 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037289 [exp] 271 / 7e-86 AT5G02920 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10029083 [exp] 269 / 7e-85 AT1G67390 54 / 6e-08 F-box family protein (.1) Lus10029003 [exp] 238 / 6e-72 AT3G49030 57 / 3e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Lus10000650 [exp] 176 / 1e-51 ND / Lus10037261 [exp] 149 / 2e-42 AT5G02920 65 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10003696 [exp] 138 / 2e-38 AT3G51530 52 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10036905 [exp] 119 / 7e-32 AT5G22660 54 / 1e-08 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Lus10028939 [exp] 120 / 5e-30 AT3G29170 80 / 3e-18 Eukaryotic protein of unknown function (DUF872) (.1) Lus10034430 [exp] 108 / 9e-27 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G099400 [exp] 61 / 8e-10 AT5G44950 77 / 1e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.014G039700 [exp] 55 / 6e-08 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.013G146800 [exp] 55 / 6e-08 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.001G395000 [exp] 54 / 9e-08 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.002G132400 [exp] 52 / 5e-07 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.001G337200 [exp] 51 / 6e-07 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G024600 [exp] 49 / 6e-06 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.001G322900 [exp] 47 / 2e-05 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.015G002100 [exp] 47 / 2e-05 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 47 / 2e-05 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034290 pacid=23175861 polypeptide=Lus10034290 locus=Lus10034290.g ID=Lus10034290.BGIv1.0 annot-version=v1.0 ATGAGTCGGAGGAAGAAGACGAAGAAGGAGGAGCCCGTCGATCGGATCTCAGACTTACCGGACGAAATAATCTACCACATCCTTCAAAGCTTACCTTGTC AGAAGGAAGCGGCGAGAACAAGCGTCTCGTCGGAAAGATGGCTCAAACTCTGGCGATCTTACCCTGTCGTCGAGAATGATCATGGCGATATTATCAAATT CGAGAGATTCGCCGTGGCTACTGTCAAGAGGCTGTTTTGTGGGAGAGGATTACCGCTACTCTTGGACTCCATCAAGATCGAACTGCCATATGAGTACAAG GACCACCGCCAGTATTCCTTTGAACTCTACCATTTGCTCTCAGCTGCGTCTCTGCCGCATACCGACGATAAACACAGCAGATACCCGCTTAAGGTCGTCG TTAAAAATAGTTCTGGGTTGCTTAAAGGAAGGATGCTATTGAATTGCCGGTTCACCAAATTCCTCCACCTGGAAGGTTTTATGCTAAGCAGATTTCGGTG TTGCGAAGCTTATCGTCGGTACAATCTTCAAGAACTCACTCTCAAAGACGTTCGGGTTAGTGAAGAGAGTTTTAGGAGCTTTATCGCTATTGTTCCTCTT ATTGAGAAATTGAGTTTGCGGTTGATTTACGGAATTCGTGGTTTGGATATCTCTGCTTCGAATTTCCCCAATTTGAAATATTTTTCCTATGATGGACTTA CCTCAGGTGGTGATCTACAGAAACTCCAGCTCAGCTCAGCCCCTCTCCTCCACACATTAATCTTCTTGGGCAACTGTAAGTTCCTGAATGTAGTTTCAGC TCCAAATGTAAAATTTGTAGAGCTTACACTCAAGGGTAAAATTAGTCGCAGAGACTTTGATGCCTTGATTTCGAAGTTACAATCTTTAGAGTCTCTTATA TTCGGAATGGCATATTTCGTAGCCGATGATGGGCTAAGGATTTCAGCCTTGAAATTAACTTTGAAACAGCAAAAACAGCTAAATGAGTTTGAGATTGATG TTCTTAATCTCGTAATTCTATCCATCAGAACCAACGATCTCTCAATCAACACTAACATAGTCAATGTTGCTTCTAGCTGCCAATGTGTAGTTGAGTGTTA CCCGTGTTACCCAAGTGACCAAATAACTAGAAGTACTTGGTTGATTGAGTTGAGGAAGTATCTTACAACATTGACTACTCGATTCCACCAACTAGTTTTC AGGTTGGTTTTCATCTCCATTCAGGTATATTATGTTATTCATTTAATTTGTGCACATCTACATCTGAGTCGAGTTTCTCTATCTGATCACTAA
AA sequence Show only first row Show all	>Lus10034290 pacid=23175861 polypeptide=Lus10034290 locus=Lus10034290.g ID=Lus10034290.BGIv1.0 annot-version=v1.0 MSRRKKTKKEEPVDRISDLPDEIIYHILQSLPCQKEAARTSVSSERWLKLWRSYPVVENDHGDIIKFERFAVATVKRLFCGRGLPLLLDSIKIELPYEYK DHRQYSFELYHLLSAASLPHTDDKHSRYPLKVVVKNSSGLLKGRMLLNCRFTKFLHLEGFMLSRFRCCEAYRRYNLQELTLKDVRVSEESFRSFIAIVPL IEKLSLRLIYGIRGLDISASNFPNLKYFSYDGLTSGGDLQKLQLSSAPLLHTLIFLGNCKFLNVVSAPNVKFVELTLKGKISRRDFDALISKLQSLESLI FGMAYFVADDGLRISALKLTLKQQKQLNEFEIDVLNLVILSIRTNDLSINTNIVNVASSCQCVVECYPCYPSDQITRSTWLIELRKYLTTLTTRFHQLVF RLVFISIQVYYVIHLICAHLHLSRVSLSDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02910			F-box/RNI-like superfamily pro...		Lus10034290 [exp]	0	1
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10001581 [exp]	15.1	0.6878
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10018077 [exp]	15.4	0.6568
AT4G19390			Uncharacterised protein family...		Lus10032866 [exp]	19.6	0.6513
AT5G22750		RAD5A, RAD5	DNA/RNA helicase protein (.1)		Lus10019523 [exp]	20.0	0.6703
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10023096 [exp]	45.0	0.6462
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10004260 [exp]	45.0	0.6475
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10034183 [exp]	64.4	0.6280
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10015094 [exp]	67.2	0.6032
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Lus10021349 [exp]	67.8	0.6267
AT1G17080			Ribosomal protein L18ae family...		Lus10026193 [exp]	79.2	0.6118

Compare expression of checked genes

Lus10034290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.